5N7Z | pdb_00005n7z

glycosyltransferase in LPS biosynthesis

PDB DOI: https://doi.org/10.2210/pdb5N7Z/pdb

Classification: TRANSFERASE
Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2017-02-21 Released: 2018-03-14
Deposition Author(s): Ashworth, G.J., Zhang, Z.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.81 Å
R-Value Free:
0.259 (Depositor), 0.240 (DCC)
R-Value Work:
0.229 (Depositor), 0.210 (DCC)
R-Value Observed:
0.231 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 2.1 of the entry. See complete history.

Literature

glycosyltransferase in LPS biosynthesis

Ashworth, G.J., Zhang, Z.

To be published.

Macromolecule Content

Total Structure Weight: 40.94 kDa
Atom Count: 2,929
Modeled Residue Count: 357
Deposited Residue Count: 359
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lipopolysaccharide 1,6-galactosyltransferase	A	359	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	Mutation(s): 0 Gene Names: rfaB, waaB, STM3719 EC: 2.4.1
UniProt
Find proteins for Q06994 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore Q06994 Go to UniProtKB: Q06994
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q06994
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.81 Å
R-Value Free: 0.259 (Depositor), 0.240 (DCC)
R-Value Work: 0.229 (Depositor), 0.210 (DCC)
R-Value Observed: 0.231 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 104.27	α = 90
b = 104.27	β = 90
c = 88.44	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data collection
xia2	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2018-03-14

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-03-14
Type: Initial release
Version 2.0: 2019-10-16
Changes: Atomic model, Data collection
Version 2.1: 2024-05-08
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.