5MP0

Human m7GpppN-mRNA Hydrolase (DCP2, NUDT20) Catalytic Domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.63 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.212 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Human m7GpppN-mRNA Hydrolase (DCP2, NUDT20) Catalytic Domain

Mathea, S.Huber, K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
m7GpppN-mRNA hydrolase
D
166Homo sapiensMutation(s): 0 
Gene Names: DCP2 (NUDT20)
EC: 3.6.1.62
Find proteins for Q8IU60 (Homo sapiens)
Go to Gene View: DCP2
Go to UniProtKB:  Q8IU60
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
D
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.63 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.212 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 48.050α = 90.00
b = 60.570β = 90.00
c = 65.450γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
iMOSFLMdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-06-28
    Type: Initial release