5MJJ

Single-shot pink beam serial crystallography: Lysozyme

  • Classification: HYDROLASE
  • Organism(s): Gallus gallus
  • Expression System: Gallus

  • Deposited: 2016-12-01 Released: 2017-12-20 
  • Deposition Author(s): Meents, A., Oberthuer, D., Lieske, J., Srajer, V.
  • Funding Organization(s): European Cluster of Advanced Laser Light Sources (EUCALL; Virtual Institute VH-VI-403, Helmholtz Association; Advanced Photon Source, a U.S. Department of Energy (DOE), Argonne National Laboratory; National Institute of General Medical Sciences, National Institutes of Health; Philip Anfinrud (NIH/NIDDK) 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75009 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.161 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Single-shot pink beam serial crystallography: Lysozyme

Meents, A.Oberthuer, D.Lieske, J.Srajer, V.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lysozyme C
A
129Gallus gallusMutation(s): 0 
Gene Names: LYZ
EC: 3.2.1.17
Find proteins for P00698 (Gallus gallus)
Go to Gene View: LYZ
Go to UniProtKB:  P00698
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75009 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.161 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 79.100α = 90.00
b = 79.100β = 90.00
c = 37.900γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
Precognition/Epinorm (RenzResearch)data reduction
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Cluster of Advanced Laser Light Sources (EUCALL--
Virtual Institute VH-VI-403, Helmholtz Association--
Advanced Photon Source, a U.S. Department of Energy (DOE), Argonne National LaboratoryDE-AC02-06CH11357
National Institute of General Medical Sciences, National Institutes of HealthR24GM111072
Philip Anfinrud (NIH/NIDDK)NSF award 1231306

Revision History 

  • Version 1.0: 2017-12-20
    Type: Initial release