5MJJ

Single-shot pink beam serial crystallography: Lysozyme

  • Classification: HYDROLASE
  • Organism(s): Gallus gallus
  • Expression System: Gallus
  • Mutation(s): No 

  • Deposited: 2016-12-01 Released: 2017-12-20 
  • Deposition Author(s): Meents, A., Oberthuer, D., Lieske, J., Srajer, V.
  • Funding Organization(s): European Cluster of Advanced Laser Light Sources (EUCALL, Virtual Institute VH-VI-403, Helmholtz Association, Advanced Photon Source, a U.S. Department of Energy (DOE), Argonne National Laboratory, National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Philip Anfinrud (NIH/NIDDK)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.161 
  • R-Value Observed: 0.164 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Single-shot pink beam serial crystallography: Lysozyme

Meents, A.Oberthuer, D.Lieske, J.Srajer, V.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Lysozyme C129Gallus gallusMutation(s): 0 
Gene Names: LYZ
EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus)
Explore P00698 
Go to UniProtKB:  P00698
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00698
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.161 
  • R-Value Observed: 0.164 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.1α = 90
b = 79.1β = 90
c = 37.9γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXphasing
Precognition/Epinorm (RenzResearch)data reduction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Cluster of Advanced Laser Light Sources (EUCALL--
Virtual Institute VH-VI-403, Helmholtz Association--
Advanced Photon Source, a U.S. Department of Energy (DOE), Argonne National LaboratoryDE-AC02-06CH11357
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)R24GM111072
Philip Anfinrud (NIH/NIDDK)NSF award 1231306

Revision History  (Full details and data files)

  • Version 1.0: 2017-12-20
    Type: Initial release
  • Version 1.1: 2022-03-30
    Changes: Author supporting evidence, Database references
  • Version 1.2: 2024-01-17
    Changes: Data collection, Refinement description