5MJJ

Single-shot pink beam serial crystallography: Lysozyme

  • Classification: HYDROLASE
  • Organism(s): Gallus gallus
  • Expression System: Gallus
  • Mutation(s): No 

  • Deposited: 2016-12-01 Released: 2017-12-20 
  • Deposition Author(s): Meents, A., Oberthuer, D., Lieske, J., Srajer, V.
  • Funding Organization(s): European Cluster of Advanced Laser Light Sources (EUCALL, Virtual Institute VH-VI-403, Helmholtz Association, Advanced Photon Source, a U.S. Department of Energy (DOE), Argonne National Laboratory, National Institute of General Medical Sciences, National Institutes of Health, Philip Anfinrud (NIH/NIDDK)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.161 
  • R-Value Observed: 0.164 

wwPDB Validation 3D Report Full Report



Literature

Single-shot pink beam serial crystallography: Lysozyme

Meents, A.Oberthuer, D.Lieske, J.Srajer, V.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lysozyme C
A
129Gallus gallusMutation(s): 0 
Gene Names: LYZ
EC: 3.2.1.17
Find proteins for P00698 (Gallus gallus)
Go to UniProtKB:  P00698
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
NA
Query on NA

Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.161 
  • R-Value Observed: 0.164 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.1α = 90
b = 79.1β = 90
c = 37.9γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXphasing
Precognition/Epinorm (RenzResearch)data reduction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Cluster of Advanced Laser Light Sources (EUCALL--
Virtual Institute VH-VI-403, Helmholtz Association--
Advanced Photon Source, a U.S. Department of Energy (DOE), Argonne National LaboratoryDE-AC02-06CH11357
National Institute of General Medical Sciences, National Institutes of HealthR24GM111072
Philip Anfinrud (NIH/NIDDK)NSF award 1231306

Revision History 

  • Version 1.0: 2017-12-20
    Type: Initial release