5MIY

Crystal structure of the E3 ubiquitin ligase RavN from Legionella pneumophila


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.717 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.161 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

RavN is a member of a previously unrecognized group of Legionella pneumophila E3 ubiquitin ligases.

Lin, Y.H.Lucas, M.Evans, T.R.Abascal-Palacios, G.Doms, A.G.Beauchene, N.A.Rojas, A.L.Hierro, A.Machner, M.P.

(2018) PLoS Pathog. 14: e1006897-e1006897


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
E3 ubiquitin ligase RavN
A, B, C
128Legionella pneumophilaMutation(s): 0 
Find proteins for A0A130MLL2 (Legionella pneumophila)
Go to UniProtKB:  A0A130MLL2
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A, C
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B, C
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.717 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.161 
  • Space Group: C 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 114.160α = 90.00
b = 177.010β = 90.00
c = 79.450γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
SHELXDphasing
XSCALEdata scaling
XSCALEdata reduction
SHELXphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Spanish Ministry of Economy and CompetitivenessSpainBFU2014-59759-R

Revision History 

  • Version 1.0: 2018-05-23
    Type: Initial release