5M13

Synthetic nanobody in complex with MBP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.372 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.168 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Synthetic single domain antibodies for the conformational trapping of membrane proteins.

Zimmermann, I.Egloff, P.Hutter, C.A.Arnold, F.M.Stohler, P.Bocquet, N.Hug, M.N.Huber, S.Siegrist, M.Hetemann, L.Gera, J.Gmur, S.Spies, P.Gygax, D.Geertsma, E.R.Dawson, R.J.Seeger, M.A.

(2018) Elife 7: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Maltose-binding periplasmic protein
A
373Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: malE
Find proteins for P0AEX9 (Escherichia coli (strain K12))
Go to UniProtKB:  P0AEX9
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
synthetic Nanobody L2_C06 (a-MBP#2)
B
126N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.372 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.168 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 58.298α = 90.00
b = 82.789β = 90.00
c = 102.583γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-11-15
    Type: Initial release
  • Version 1.1: 2018-11-28
    Type: Data collection, Database references