5LQH

A two-quartet G-quadruplex formed by human telomere in KCl solution at pH 5.0


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Reversible pH Switch of Two-Quartet G-Quadruplexes Formed by Human Telomere.

Galer, P.Wang, B.Sket, P.Plavec, J.

(2016) Angew.Chem.Int.Ed.Engl. 55: 1993-1997

  • DOI: 10.1002/anie.201507569
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • A four-repeat human telomere DNA sequence without the 3'-end guanine, d[TAGGG(TTAGGG)2 TTAGG] (htel1-ΔG23) has been found to adopt two distinct two G-quartet antiparallel basket-type G-quadruplexes, TD and KDH(+) in presence of KCl. NMR, CD, and UV s ...

    A four-repeat human telomere DNA sequence without the 3'-end guanine, d[TAGGG(TTAGGG)2 TTAGG] (htel1-ΔG23) has been found to adopt two distinct two G-quartet antiparallel basket-type G-quadruplexes, TD and KDH(+) in presence of KCl. NMR, CD, and UV spectroscopy have demonstrated that topology of KDH(+) form is distinctive with unique protonated T18⋅A20(+) ⋅G5 base triple and other capping structural elements that provide novel insight into structural polymorphism and heterogeneity of G-quadruplexes in general. Specific stacking interactions amongst two G-quartets flanking base triples and base pairs in TD and KDH(+) forms are reflected in 10 K higher thermal stability of KDH(+) . Populations of TD and KDH(+) forms are controlled by pH. The (de)protonation of A20 is the key for pH driven structural transformation of htel1-ΔG23. Reversibility offers possibilities for its utilization as a conformational switch within different compartments of living cell enabling specific ligand and protein interactions.


    Organizational Affiliation

    Slovenian NMR Center, National Institute of Chemistry, Hajdrihova 19, Ljubljana, Slovenia.,Slovenian NMR Center, National Institute of Chemistry, Hajdrihova 19, Ljubljana, Slovenia. janez.plavec@ki.si.,Faculty of Chemistry and Chemical Technology, University of Ljubljana, Večna pot 113, Ljubljana, Slovenia. janez.plavec@ki.si.,EN-FIST Center of Excellence, Trg OF 13, 1000, Ljubljana, Slovenia. primoz.sket@ki.si.,EN-FIST Center of Excellence, Trg OF 13, 1000, Ljubljana, Slovenia. janez.plavec@ki.si.,Slovenian NMR Center, National Institute of Chemistry, Hajdrihova 19, Ljubljana, Slovenia. primoz.sket@ki.si.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')A22Homo sapiens
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-01-17
    Type: Initial release
  • Version 1.1: 2018-02-14
    Type: Data collection
  • Version 1.2: 2019-05-08
    Type: Data collection
  • Version 1.3: 2019-08-07
    Type: Data collection, Database references