Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 14402.07 
• Atom Count: 1000 
• Residue Count: 129 
• Unique protein chains: 1

5LIN

Lysozyme, collected at rotation 1 degree per second

• DOI: 10.2210/pdb5LIN/pdb

• Classification: HYDROLASE
• Organism(s): Gallus gallus


• Deposited: 2016-07-15 Released: 2016-08-03 
• Deposition Author(s): Casanas, A., Finke, A., Wang, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.496 Å
• R-Value Free: 0.233 
• R-Value Work: 0.182 

Literature

EIGER detector: application in macromolecular crystallography.

Casanas, A., Warshamanage, R., Finke, A.D., Panepucci, E., Olieric, V., Noll, A., Tampe, R., Brandstetter, S., Forster, A., Mueller, M., Schulze-Briese, C., Bunk, O., Wang, M.

(2016) Acta Crystallogr D Struct Biol 72: 1036-1048

• PubMed: 27599736 
• DOI: 10.1107/S2059798316012304
• Primary Citation of Related Structures:  
  5LIS, 5LIO


• PubMed Abstract: 
  

The development of single-photon-counting detectors, such as the PILATUS, has been a major recent breakthrough in macromolecular crystallography, enabling noise-free detection and novel data-acquisition modes. The new EIGER detector features a pixel size of 75 × 75 µm, frame rates of up to 3000 Hz and a dead time as low as 3.8 µs. An EIGER 1M and EIGER 16M were tested on Swiss Light Source beamlines X10SA and X06SA for their application in macromolecular crystallography. The combination of fast frame rates and a very short dead time allows high-quality data acquisition in a shorter time. The ultrafine ϕ-slicing data-collection method is introduced and validated and its application in finding the optimal rotation angle, a suitable rotation speed and a sufficient X-ray dose are presented. An improvement of the data quality up to slicing at one tenth of the mosaicity has been observed, which is much finer than expected based on previous findings. The influence of key data-collection parameters on data quality is discussed.

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Organizational Affiliation: 

Swiss Light Source, Paul Scherrer Institute, 5232 Villigen, Switzerland.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Lysozyme C	A	129	Gallus gallus	Mutation(s): 0  Gene Names: LYZ EC: 3.2.1.17
Find proteins for P00698 (Gallus gallus) Go to Gene View: LYZ Go to UniProtKB:  P00698

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
CL	A	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.496 Å
• R-Value Free: 0.233 
• R-Value Work: 0.182 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length (Å)	Angle (°)
a = 77.977	α = 90.00
b = 77.977	β = 90.00
c = 36.949	γ = 90.00

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2016-07-15 
• Released Date: 2016-08-03 
• Deposition Author(s): Casanas, A., Finke, A., Wang, M.

Revision History 

• Version 1.0: 2016-08-03
  Type: Initial release
• Version 1.1: 2016-09-14
  Type: Database references
• Version 1.2: 2016-09-21
  Type: Data collection
• Version 1.3: 2016-09-28
  Type: Database references