5KDM

Crystal structure of EBV tegument protein BNRF1 in complex with histone chaperone DAXX and histones H3.3-H4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.234 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis underlying viral hijacking of a histone chaperone complex.

Huang, H.Deng, Z.Vladimirova, O.Wiedmer, A.Lu, F.Lieberman, P.M.Patel, D.J.

(2016) Nat Commun 7: 12707-12707


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Histone H3.3
A
135Homo sapiensGene Names: H3F3A, H3F3B (H3.3A, H3F3, H3.3B)
Find proteins for P84243 (Homo sapiens)
Go to Gene View: H3F3A H3F3B
Go to UniProtKB:  P84243
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Histone H4
B
102Homo sapiensGene Names: HIST1H4A, HIST1H4B, HIST1H4C, HIST1H4D, HIST1H4E, HIST1H4F, HIST1H4H, HIST1H4I, HIST1H4J, HIST1H4K, HIST1H4L, HIST2H4A, HIST2H4B, HIST4H4 (H4/A, H4FA, H4/I, H4FI, H4/G, H4FG, H4/B, H4FB, H4/J, H4FJ, H4/C, H4FC, H4/H, H4FH, H4/M, H4FM, H4/E, H4FE, H4/D, H4FD, H4/K, H4FK, H4/N, H4F2, H4FN, HIST2H4, H4/O, H4FO)
Find proteins for P62805 (Homo sapiens)
Go to UniProtKB:  P62805
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Death domain-associated protein 6
C
212Homo sapiensGene Names: DAXX (BING2, DAP6)
Find proteins for Q9UER7 (Homo sapiens)
Go to Gene View: DAXX
Go to UniProtKB:  Q9UER7
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Major tegument protein
D
219Epstein-Barr virus (strain AG876)
Find proteins for Q1HVJ0 (Epstein-Barr virus (strain AG876))
Go to UniProtKB:  Q1HVJ0
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.234 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 161.216α = 90.00
b = 161.216β = 90.00
c = 117.772γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHASERphasing
PHENIXrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2016-06-08 
  • Released Date: 2016-09-07 
  • Deposition Author(s): Huang, H., Patel, D.

Revision History 

  • Version 1.0: 2016-09-07
    Type: Initial release
  • Version 1.1: 2018-05-16
    Type: Data collection, Database references, Derived calculations, Source and taxonomy