5JOQ | pdb_00005joq

Crystal Structure of an ABC Transporter Substrate-Binding Protein from Listeria monocytogenes EGD-e

• PDB DOI: https://doi.org/10.2210/pdb5JOQ/pdb

• Classification: HYDROLASE
• Organism(s): Listeria monocytogenes EGD-e
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2016-05-02 Released: 2016-07-27 
• Deposition Author(s): Brunzelle, J.S., Wawrzak, Z., Kudritska, M., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.99 Å
• R-Value Free: 
  0.171 (Depositor), 0.175 (DCC) 
• R-Value Work: 
  0.151 (Depositor), 0.157 (DCC) 
• R-Value Observed: 
  0.152 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of an ABC Transporter Substrate-Binding Protein from Listeria monocytogenes EGD-e

Brunzelle, J.S., Wawrzak, Z., Kudritska, M., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 32.46 kDa 
• Atom Count: 2,436 
• Modeled Residue Count: 258 
• Deposited Residue Count: 290 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lmo2184 protein	A	290	Listeria monocytogenes EGD-e	Mutation(s): 0  Gene Names: lmo2184
UniProt
Find proteins for Q7AP55 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)) Explore Q7AP55  Go to UniProtKB:  Q7AP55

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CIT	B [auth A]	CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N
CL	C [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.99 Å
• R-Value Free:  0.171 (Depositor), 0.175 (DCC) 
• R-Value Work:  0.151 (Depositor), 0.157 (DCC) 
• R-Value Observed: 0.152 (Depositor) 

Diffraction Data: https://doi.org/10.18430/m35joq

Space Group: P 6₃ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 118.38	α = 90
b = 118.38	β = 90
c = 106	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data reduction
xia2	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-07-27 
Deposition Author(s): Brunzelle, J.S., Wawrzak, Z., Kudritska, M., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2016-07-27
  Type: Initial release
  
• Version 1.1: 2018-01-24
  Changes: Database references, Derived calculations
• Version 1.2: 2023-09-27
  Changes: Data collection, Database references, Refinement description