5JO9

Structural characterization of the thermostable Bradyrhizobium japonicum d-sorbitol dehydrogenase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.894 Å
  • R-Value Free: 0.295 
  • R-Value Work: 0.270 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural characterization of the thermostable Bradyrhizobium japonicumD-sorbitol dehydrogenase.

Fredslund, F.Otten, H.Gemperlein, S.Poulsen, J.C.Carius, Y.Kohring, G.W.Lo Leggio, L.

(2016) Acta Crystallogr F Struct Biol Commun 72: 846-852


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ribitol 2-dehydrogenase
A
242Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)Mutation(s): 0 
Gene Names: rdh
Find proteins for Q89FN7 (Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110))
Go to UniProtKB:  Q89FN7
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
SOR
Query on SOR

Download SDF File 
Download CCD File 
A
D-SORBITOL
C6 H14 O6
FBPFZTCFMRRESA-JGWLITMVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.894 Å
  • R-Value Free: 0.295 
  • R-Value Work: 0.270 
  • Space Group: P 62 2 2
Unit Cell:
Length (Å)Angle (°)
a = 100.879α = 90.00
b = 100.879β = 90.00
c = 88.600γ = 120.00
Software Package:
Software NamePurpose
XDSdata scaling
PHENIXrefinement
PHASERphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-11-09
    Type: Initial release
  • Version 1.1: 2018-04-18
    Type: Data collection, Database references