Download MendeleyPDE5A for NaV1.7
Bell, A., Bent, A., Bradley, P., Erdman, P., de Groot, M., Lewthwaite, R., Marsh, I., Ransley, S., Sciammetta, N., Smith, R., Swain, N., Torella, R., Storer, I.To be published.
5JO3
PDE5A for NaV1.7
- PDB DOI: https://doi.org/10.2210/pdb5JO3/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Spodoptera frugiperda
- Mutation(s): No
- Deposited: 2016-05-01 Released: 2017-05-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.49 Å
- R-Value Free: 0.201
- R-Value Work: 0.180
- R-Value Observed: 0.181
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| cGMP-specific 3',5'-cyclic phosphodiesterase | A [auth B] | 326 | Homo sapiens | Mutation(s): 0 Gene Names: PDE5A, PDE5 EC: 3.1.4.35 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O76074 (Homo sapiens) Explore O76074 Go to UniProtKB: O76074 | |||||
PHAROS: O76074 GTEx: ENSG00000138735 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O76074 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 6LK Query on 6LK | D [auth B] | 1-(5-chloro-6-methoxypyridin-3-yl)-3-methyl-N-(methylsulfonyl)-1H-indazole-5-carboxamide C16 H15 Cl N4 O4 S SOMKDSWCLVBQLT-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | B, C [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.49 Å
- R-Value Free: 0.201
- R-Value Work: 0.180
- R-Value Observed: 0.181
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 55.84 | α = 90 |
| b = 76.1 | β = 102.56 |
| c = 80.92 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| BUSTER | phasing |
Entry History
Deposition Data
- Released Date: 2017-05-03 Deposition Author(s): Storer, I., Chrencik, J.
Revision History (Full details and data files)
- Version 1.0: 2017-05-03
Type: Initial release - Version 1.1: 2017-08-09
Changes: Database references - Version 1.2: 2024-03-06
Changes: Data collection, Database references, Derived calculations
