5JHW

Crystal Structure of the GDF11:Follistatin 288 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis for potency differences between GDF8 and GDF11.

Walker, R.G.Czepnik, M.Goebel, E.J.McCoy, J.C.Vujic, A.Cho, M.Oh, J.Aykul, S.Walton, K.L.Schang, G.Bernard, D.J.Hinck, A.P.Harrison, C.A.Martinez-Hackert, E.Wagers, A.J.Lee, R.T.Thompson, T.B.

(2017) BMC Biol. 15: 19-19

  • DOI: 10.1186/s12915-017-0350-1
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Growth/differentiation factor 8 (GDF8) and GDF11 are two highly similar members of the transforming growth factor β (TGFβ) family. While GDF8 has been recognized as a negative regulator of muscle growth and differentiation, there are conflicting stud ...

    Growth/differentiation factor 8 (GDF8) and GDF11 are two highly similar members of the transforming growth factor β (TGFβ) family. While GDF8 has been recognized as a negative regulator of muscle growth and differentiation, there are conflicting studies on the function of GDF11 and whether GDF11 has beneficial effects on age-related dysfunction. To address whether GDF8 and GDF11 are functionally identical, we compared their signaling and structural properties.


    Organizational Affiliation

    Department of Molecular Genetics, Biochemistry, and Microbiology, University of Cincinnati, Cincinnati, OH, 45267, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Growth/differentiation factor 11
A, B
109Homo sapiensMutation(s): 0 
Gene Names: GDF11 (BMP11)
Find proteins for O95390 (Homo sapiens)
Go to Gene View: GDF11
Go to UniProtKB:  O95390
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Follistatin
C, D
288Homo sapiensMutation(s): 0 
Gene Names: FST
Find proteins for P19883 (Homo sapiens)
Go to Gene View: FST
Go to UniProtKB:  P19883
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A, C, D
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
FLC
Query on FLC

Download SDF File 
Download CCD File 
A, B, C, D
CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.202 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 55.960α = 90.00
b = 59.080β = 90.00
c = 288.460γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
PHASERphasing
MOSFLMdata reduction
PHENIXrefinement
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR01GM114640
Muscular Dystrophy AssociationUnited States240087
American Heart AssociationUnited States12PRE11790027

Revision History 

  • Version 1.0: 2017-03-22
    Type: Initial release
  • Version 1.1: 2017-09-27
    Type: Author supporting evidence