5JHW
Crystal Structure of the GDF11:Follistatin 288 complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5jhwa_ | Small proteins | Cystine-knot cytokines | Cystine-knot cytokines | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d5jhwb_ | Small proteins | Cystine-knot cytokines | Cystine-knot cytokines | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TGF_beta | e5jhwA1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
B | TGF_beta | e5jhwB1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
C | PRKCSH_like | e5jhwC3 | A: few secondary structure elements | X: TB module/8-cys domain (From Topology) | H: TB module/8-cys domain (From Topology) | T: TB module/8-cys domain | F: PRKCSH_like | ECOD (1.6) |
C | Kazal_2 | e5jhwC6 | A: few secondary structure elements | X: Kazal-type serine protease inhibitors-like | H: Kazal-type serine protease inhibitors (From Topology) | T: Kazal-type serine protease inhibitors | F: Kazal_2 | ECOD (1.6) |
C | Kazal_1_2 | e5jhwC1 | A: few secondary structure elements | X: Kazal-type serine protease inhibitors-like | H: Kazal-type serine protease inhibitors (From Topology) | T: Kazal-type serine protease inhibitors | F: Kazal_1_2 | ECOD (1.6) |
C | FOLN_like_1 | e5jhwC2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: FOLN_like_1 | ECOD (1.6) |
C | FOLN | e5jhwC5 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: FOLN | ECOD (1.6) |
C | FOLN_like_1,EUF08727 | e5jhwC7 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: FOLN_like_1,EUF08727 | ECOD (1.6) |
D | PRKCSH_like | e5jhwD4 | A: few secondary structure elements | X: TB module/8-cys domain (From Topology) | H: TB module/8-cys domain (From Topology) | T: TB module/8-cys domain | F: PRKCSH_like | ECOD (1.6) |
D | Kazal_2 | e5jhwD3 | A: few secondary structure elements | X: Kazal-type serine protease inhibitors-like | H: Kazal-type serine protease inhibitors (From Topology) | T: Kazal-type serine protease inhibitors | F: Kazal_2 | ECOD (1.6) |
D | Kazal_1_2 | e5jhwD5 | A: few secondary structure elements | X: Kazal-type serine protease inhibitors-like | H: Kazal-type serine protease inhibitors (From Topology) | T: Kazal-type serine protease inhibitors | F: Kazal_1_2 | ECOD (1.6) |
D | FOLN_like_1 | e5jhwD7 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: FOLN_like_1 | ECOD (1.6) |
D | FOLN | e5jhwD1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: FOLN | ECOD (1.6) |
D | FOLN_like_1,EUF08727 | e5jhwD2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: FOLN_like_1,EUF08727 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 3.90.290.10 | Alpha Beta | Alpha-Beta Complex | Extracellular Matrix Fibrillin | TGF-beta binding (TB) domain | CATH (4.3.0) |
C | 3.30.60.30 | Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2) | domain 1 | CATH (4.3.0) |
D | 3.90.290.10 | Alpha Beta | Alpha-Beta Complex | Extracellular Matrix Fibrillin | TGF-beta binding (TB) domain | CATH (4.3.0) |
D | 3.30.60.30 | Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2) | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00019 | Transforming growth factor beta like domain (TGF_beta) | Transforming growth factor beta like domain | - | Domain | |
PF09289 | Follistatin/Osteonectin-like EGF domain (FOLN) | Follistatin/Osteonectin-like EGF domain | Members of this family are predominantly found in osteonectin and follistatin and adopt an EGF-like fold [1,2]. | Domain | |
PF21333 | Follistatin, N-terminal (FST_N) | Follistatin, N-terminal | Follistatin (FST) is required for normal embryonic and ovarian follicle development. It regulates transforming growth factor-beta superfamily ligands, being described as a ligand antagonist. It consists of a N-terminal domain with a modified TB fold ... | Domain | |
PF07648 | Kazal-type serine protease inhibitor domain (Kazal_2) | Kazal-type serine protease inhibitor domain | Usually indicative of serine protease inhibitors. However, kazal-like domains are also seen in the extracellular part of agrins, which are not known to be protease inhibitors. Kazal domains often occur in tandem arrays. Small alpha+beta fold containi ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029034 | Cystine-knot cytokine | Homologous Superfamily | |
IPR015615 | Transforming growth factor-beta-related | Family | |
IPR017948 | Transforming growth factor beta, conserved site | Conserved Site | |
IPR001111 | TGF-beta, propeptide | Domain | |
IPR001839 | Transforming growth factor-beta, C-terminal | Domain | |
IPR015369 | Follistatin/Osteonectin EGF domain | Domain | |
IPR036058 | Kazal domain superfamily | Homologous Superfamily | |
IPR002350 | Kazal domain | Domain | |
IPR003645 | Follistatin-like, N-terminal | Domain | |
IPR036773 | TGF-beta binding (TB) domain superfamily | Homologous Superfamily | |
IPR050653 | Protease Inhibitors and Growth Factor Antagonists | Family | |
IPR017878 | TB domain | Domain |