5JHW | pdb_00005jhw

Crystal Structure of the GDF11:Follistatin 288 complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5jhwa_	Small proteins	Cystine-knot cytokines	Cystine-knot cytokines	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d5jhwb_	Small proteins	Cystine-knot cytokines	Cystine-knot cytokines	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Cystine-knot cytokines	8089948	3000846	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cystine-knot cytokines	8089948	3000846	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	TTL, ATPgrasp_YheCD	e5jhwD1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Nucleic acid-binding protein	T: Chelatase-like	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
C	TTL, ATPgrasp_YheCD	e5jhwC1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Nucleic acid-binding protein	T: Chelatase-like	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
A	TTL, ATPgrasp_YheCD	e5jhwA1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Nucleic acid-binding protein	T: Chelatase-like	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
B	TTL, ATPgrasp_YheCD	e5jhwB1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Nucleic acid-binding protein	T: Chelatase-like	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.90.290.10	Alpha Beta	Alpha-Beta Complex	Extracellular Matrix Fibrillin	TGF-beta binding (TB) domain	CATH (4.3.0)
D	3.30.60.30	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2)	domain 1	CATH (4.3.0)
C	3.90.290.10	Alpha Beta	Alpha-Beta Complex	Extracellular Matrix Fibrillin	TGF-beta binding (TB) domain	CATH (4.3.0)
C	3.30.60.30	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2)	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D	PF09289	Follistatin/Osteonectin-like EGF domain (FOLN)	Follistatin/Osteonectin-like EGF domain	Members of this family are predominantly found in osteonectin and follistatin and adopt an EGF-like fold [1,2].	Domain
C, D	PF21333	Follistatin, N-terminal (FST_N)	Follistatin, N-terminal	Follistatin (FST) is required for normal embryonic and ovarian follicle development. It regulates transforming growth factor-beta superfamily ligands, being described as a ligand antagonist. It consists of a N-terminal domain with a modified TB fold ...	Follistatin (FST) is required for normal embryonic and ovarian follicle development. It regulates transforming growth factor-beta superfamily ligands, being described as a ligand antagonist. It consists of a N-terminal domain with a modified TB fold and three follistatin domains (FSD1-3) each of which is subdivided in EGF-like and Kazal-like subdomains [1-4]. This domain is important for ligand specificity.	Domain
C, D	PF07648	Kazal-type serine protease inhibitor domain (Kazal_2)	Kazal-type serine protease inhibitor domain	Usually indicative of serine protease inhibitors. However, kazal-like domains are also seen in the extracellular part of agrins, which are not known to be protease inhibitors. Kazal domains often occur in tandem arrays. Small alpha+beta fold containi ...	Usually indicative of serine protease inhibitors. However, kazal-like domains are also seen in the extracellular part of agrins, which are not known to be protease inhibitors. Kazal domains often occur in tandem arrays. Small alpha+beta fold containing three disulphides.	Domain
A, B	PF00019	Transforming growth factor beta like domain (TGF_beta)	Transforming growth factor beta like domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	Follistatin	protein-containing complex binding activin binding binding activin receptor antagonist activity molecular function inhibitor activity molecular function regulator activity signaling receptor inhibitor activity receptor antagonist activity signaling receptor regulator activity protein binding heparan sulfate proteoglycan binding proteoglycan binding carbohydrate derivative binding	developmental process multicellular organism development multicellular organismal process anatomical structure development pattern specification process cellular developmental process cell differentiation cellular process cellular response to stimulus cellular response to BMP stimulus regulation of biological process cell surface receptor protein serine/threonine kinase signaling pathway regulation of cellular process cellular response to growth factor stimulus developmental process multicellular organism development multicellular organismal process anatomical structure development pattern specification process cellular developmental process cell differentiation cellular process cellular response to stimulus cellular response to BMP stimulus regulation of biological process cell surface receptor protein serine/threonine kinase signaling pathway regulation of cellular process cellular response to growth factor stimulus cell surface receptor signaling pathway response to stimulus signaling response to endogenous stimulus biological regulation cell communication cellular response to endogenous stimulus response to BMP transforming growth factor beta receptor superfamily signaling pathway signal transduction response to growth factor BMP signaling pathway enzyme-linked receptor protein signaling pathway sexual reproduction reproductive process multicellular organismal reproductive process gamete generation activin receptor signaling pathway negative regulation of signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication negative regulation of activin receptor signaling pathway negative regulation of cellular process regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus regulation of cell communication regulation of activin receptor signaling pathway negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway anatomical structure morphogenesis odontogenesis of dentin-containing tooth odontogenesis animal organ development animal organ morphogenesis skeletal system development system development cell population proliferation epithelial cell proliferation keratinocyte proliferation regulation of developmental process regulation of cell differentiation epithelial cell differentiation regulation of epithelial cell differentiation regulation of multicellular organismal process negative regulation of cell differentiation epithelium development regulation of multicellular organismal development negative regulation of epithelial cell differentiation negative regulation of developmental process tissue development epidermis development molting cycle process hair cycle epidermis morphogenesis morphogenesis of an epithelium tissue morphogenesis skin development skin epidermis development hair follicle development molting cycle hair cycle process hair follicle morphogenesis regulation of BMP signaling pathway regulation of cellular response to growth factor stimulus positive regulation of biological process regulation of hair cycle positive regulation of developmental process positive regulation of hair follicle development regulation of hair follicle development positive regulation of multicellular organismal process hemopoiesis cell development hematopoietic progenitor cell differentiation RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process ameloblast differentiation columnar/cuboidal epithelial cell differentiation gonad development reproductive system development female gonad development sex differentiation female sex differentiation development of primary female sexual characteristics developmental process involved in reproduction development of primary sexual characteristics reproductive structure development	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen cytoplasm extracellular region extracellular space
A, B	Growth/differentiation factor 11	molecular function activator activity molecular function regulator activity signaling receptor regulator activity growth factor activity receptor ligand activity signaling receptor activator activity cytokine activity	cellular response to stimulus positive regulation of cell communication cell surface receptor protein serine/threonine kinase signaling pathway regulation of cellular process positive regulation of signal transduction response to stimulus signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette cellular response to stimulus positive regulation of cell communication cell surface receptor protein serine/threonine kinase signaling pathway regulation of cellular process positive regulation of signal transduction response to stimulus signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction enzyme-linked receptor protein signaling pathway positive regulation of cellular process regulation of biological process regulation of signaling cell surface receptor signaling pathway biological regulation positive regulation of intracellular signal transduction positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway SMAD protein signal transduction regulation of response to stimulus regulation of cell communication cellular process regulation of SMAD protein signal transduction positive regulation of SMAD protein signal transduction positive regulation of signaling developmental process anatomical structure development tissue development mesoderm development multicellular organism development multicellular organismal process skeletal system development system development cell population proliferation activin receptor signaling pathway transforming growth factor beta receptor superfamily signaling pathway cellular developmental process cell development epithelial cell differentiation pancreas development cell differentiation endocrine pancreas development cell maturation type B pancreatic cell differentiation epithelium development type B pancreatic cell maturation endocrine system development animal organ development developmental maturation type B pancreatic cell development epithelial cell development anatomical structure maturation epithelial cell maturation enteroendocrine cell differentiation regulation of developmental process sensory organ development negative regulation of biological process retina development in camera-type eye visual system development neural retina development regulation of cell differentiation central nervous system neuron differentiation neurogenesis regulation of amacrine cell differentiation amacrine cell differentiation neuron differentiation negative regulation of cellular process negative regulation of cell differentiation sensory system development eye development negative regulation of developmental process negative regulation of amacrine cell differentiation nervous system development generation of neurons central nervous system development camera-type eye development negative regulation of neuron differentiation regulation of neuron differentiation ureteric bud development mesonephric epithelium development kidney epithelium development mesonephros development tube development renal system development kidney development mesonephric tubule development negative regulation of cell population proliferation regulation of cell population proliferation camera-type eye morphogenesis eye morphogenesis anatomical structure morphogenesis sensory organ morphogenesis animal organ morphogenesis metanephros development roof of mouth development anterior/posterior pattern specification pattern specification process regionalization spinal cord development spinal cord anterior/posterior patterning spinal cord patterning cellular response to growth factor stimulus cellular response to transforming growth factor beta stimulus response to endogenous stimulus cellular response to endogenous stimulus response to transforming growth factor beta transforming growth factor beta receptor signaling pathway response to growth factor	protein-containing complex cellular anatomical structure extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR015369	Follistatin/Osteonectin EGF domain	Domain
C, D	IPR036058	Kazal domain superfamily	Homologous Superfamily
C, D	IPR002350	Kazal domain	Domain
C, D	IPR003645	Follistatin-like, N-terminal	Domain
C, D	IPR036773	TGF-beta binding (TB) domain superfamily	Homologous Superfamily
C, D	IPR050653	Protease Inhibitors and Growth Factor Antagonists	Family
C, D	IPR017878	TB domain	Domain
A, B	IPR029034	Cystine-knot cytokine	Homologous Superfamily
A, B	IPR017948	Transforming growth factor beta, conserved site	Conserved Site
A, B	IPR015615	Transforming growth factor-beta-like	Family
A, B	IPR001111	TGF-beta, propeptide	Domain
A, B	IPR001839	Transforming growth factor-beta, C-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D	Pharos: P19883	acute liver failure breast cancer liver cancer breast carcinoma Liver carcinoma malignant glioma myopathy ovarian cancer pituitary cancer atypical teratoid rhabdoid tumor psoriasis cystic fibrosis gastric cancer hepatocellular carcinoma large cell medulloblastoma acute liver failure breast cancer liver cancer breast carcinoma Liver carcinoma malignant glioma myopathy ovarian cancer pituitary cancer atypical teratoid rhabdoid tumor psoriasis cystic fibrosis gastric cancer hepatocellular carcinoma large cell medulloblastoma liver neoplasm non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia amyotrophic lateral sclerosis polycystic ovary syndrome Duchenne muscular dystrophy gastric neoplasm hereditary diffuse gastric adenocarcinoma lung cancer medulloblastoma osteosarcoma acne pilocytic astrocytoma atopic eczema primitive neuroectodermal tumor ulcerative colitis Emery-Dreifuss muscular dystrophy glioblastoma juvenile dermatomyositis
A, B	Pharos: O95390	age-related macular degeneration Currarino triad myelodysplastic syndrome pituitary cancer atrial fibrillation lung cancer osteosarcoma wet macular degeneration beta thalassemia medulloblastoma ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.