5JFI

Crystal structure of a TDIF-TDR complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.749 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.214 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of a TDIF-TDR complex

Xu, G.Li, Z.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Leucine-rich repeat receptor-like protein kinase TDR
A, B
613Arabidopsis thalianaMutation(s): 0 
Gene Names: TDR (PXY)
EC: 2.7.11.1
Find proteins for Q9FII5 (Arabidopsis thaliana)
Go to UniProtKB:  Q9FII5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
CLE41
C, D
12Arabidopsis thalianaMutation(s): 0 
Gene Names: CLE41
Find proteins for Q84W98 (Arabidopsis thaliana)
Go to UniProtKB:  Q84W98
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
HYP
Query on HYP
C, D
L-PEPTIDE LINKINGC5 H9 N O3PRO
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.749 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.214 
  • Space Group: P 41
Unit Cell:
Length (Å)Angle (°)
a = 92.445α = 90.00
b = 92.445β = 90.00
c = 252.615γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PHASERphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2016-04-19 
  • Released Date: 2017-03-29 
  • Deposition Author(s): Xu, G., Li, Z.

Revision History 

  • Version 1.0: 2017-03-29
    Type: Initial release