5JBY | pdb_00005jby

Lys27-linked triubiquitin

PDB DOI: https://doi.org/10.2210/pdb5JBY/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2016-04-14 Released: 2016-07-20
Deposition Author(s): Pan, M., Gao, S., Zheng, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.99 Å
R-Value Free:
0.308 (Depositor), 0.308 (DCC)
R-Value Work:
0.237 (Depositor), 0.245 (DCC)
R-Value Observed:
0.241 (Depositor)

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This is version 1.1 of the entry. See complete history.

Literature

Structure of Lys27-linked triubiquitin

Pan, M., Gao, S., Zheng, Y.

To be published.

Macromolecule Content

Total Structure Weight: 51.43 kDa
Atom Count: 3,573
Modeled Residue Count: 419
Deposited Residue Count: 456
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ubiquitin	A, C, E	76	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P0CG47 (Homo sapiens) Explore P0CG47 Go to UniProtKB: P0CG47
PHAROS: P0CG47 GTEx: ENSG00000170315
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CG47
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
D-ubiquitin	B, D, F	76	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62987 (Homo sapiens) Explore P62987 Go to UniProtKB: P62987
PHAROS: P62987 GTEx: ENSG00000221983
Entity Groups
UniProt Group	P62987
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.99 Å
R-Value Free: 0.308 (Depositor), 0.308 (DCC)
R-Value Work: 0.237 (Depositor), 0.245 (DCC)
R-Value Observed: 0.241 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.758	α = 90.02
b = 51.749	β = 118.15
c = 54.977	γ = 119.95

Software Package:

Software Name	Purpose
PHENIX	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-07-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-07-20
Type: Initial release
Version 1.1: 2022-02-09
Changes: Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.