5JBY

Lys27-linked triubiquitin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.987 Å
  • R-Value Free: 0.308 
  • R-Value Work: 0.237 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of Lys27-linked triubiquitin

Pan, M.Gao, S.Zheng, Y.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ubiquitin
A, C, E
76Homo sapiensMutation(s): 0 
Gene Names: UBA52 (UBCEP2)
Find proteins for P62987 (Homo sapiens)
Go to Gene View: UBA52
Go to UniProtKB:  P62987
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
D-ubiquitin
B, D, F
76Homo sapiensMutation(s): 0 
Gene Names: UBA52 (UBCEP2)
Find proteins for P62987 (Homo sapiens)
Go to Gene View: UBA52
Go to UniProtKB:  P62987
Small Molecules
Modified Residues  17 Unique
IDChainsTypeFormula2D DiagramParent
DIL
Query on DIL
B, D, F
D-PEPTIDE LINKINGC6 H13 N O2

--

DNE
Query on DNE
B, D, F
D-PEPTIDE LINKINGC6 H13 N O2

--

DPR
Query on DPR
B, D, F
D-PEPTIDE LINKINGC5 H9 N O2

--

DLY
Query on DLY
B, D, F
D-PEPTIDE LINKINGC6 H14 N2 O2

--

DHI
Query on DHI
B, D, F
D-PEPTIDE LINKINGC6 H10 N3 O2

--

DSN
Query on DSN
B, D, F
D-PEPTIDE LINKINGC3 H7 N O3

--

DVA
Query on DVA
B, D, F
D-PEPTIDE LINKINGC5 H11 N O2

--

DTH
Query on DTH
B, D, F
D-PEPTIDE LINKINGC4 H9 N O3

--

DLE
Query on DLE
B, D, F
D-PEPTIDE LINKINGC6 H13 N O2

--

DGL
Query on DGL
B, D, F
D-PEPTIDE LINKINGC5 H9 N O4

--

DAL
Query on DAL
B, D, F
D-PEPTIDE LINKINGC3 H7 N O2

--

DPN
Query on DPN
B, D, F
D-PEPTIDE LINKINGC9 H11 N O2

--

DGN
Query on DGN
B, D, F
D-PEPTIDE LINKINGC5 H10 N2 O3

--

DAS
Query on DAS
B, D, F
D-PEPTIDE LINKINGC4 H7 N O4

--

DSG
Query on DSG
B, D, F
D-PEPTIDE LINKINGC4 H8 N2 O3

--

DTY
Query on DTY
B, D, F
D-PEPTIDE LINKINGC9 H11 N O3

--

DAR
Query on DAR
B, D, F
D-PEPTIDE LINKINGC6 H15 N4 O2

--

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.987 Å
  • R-Value Free: 0.308 
  • R-Value Work: 0.237 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 51.758α = 90.02
b = 51.749β = 118.15
c = 54.977γ = 119.95
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-07-20
    Type: Initial release