5J3N

C-terminal domain of EcoR124I HsdR subunit fused with the pH-sensitive GFP variant ratiometric pHluorin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of a novel domain of the motor subunit of the Type I restriction enzyme EcoR124 involved in complex assembly and DNA binding.

Grinkevich, P.Sinha, D.Iermak, I.Guzanova, A.Weiserova, M.Ludwig, J.Mesters, J.R.Ettrich, R.H.

(2018) J. Biol. Chem. 293: 15043-15054


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Green fluorescent protein,HsdR
A, B
398Escherichia coliAequorea victoria
This entity is chimeric
Mutation(s): 12 
Gene Names: hsdR (hsr), GFP
EC: 3.1.21.3
Find proteins for P10486 (Escherichia coli)
Go to UniProtKB:  P10486
Find proteins for P42212 (Aequorea victoria)
Go to UniProtKB:  P42212
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
GYS
Query on GYS
A, B
L-PEPTIDE LINKINGC14 H15 N3 O5SER, TYR, GLY
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.192 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 83.386α = 90.00
b = 176.505β = 90.00
c = 126.023γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
REFMACrefinement
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Czech Science FoundationCzech RepublicP207/12/2323
MEYSCzech RepublicLM2015055

Revision History 

  • Version 1.0: 2017-04-12
    Type: Initial release
  • Version 1.1: 2018-03-07
    Type: Data collection
  • Version 1.2: 2018-08-22
    Type: Data collection, Database references, Derived calculations
  • Version 1.3: 2018-10-24
    Type: Data collection, Database references