5J26

Crystal structure of a 53BP1 Tudor domain in complex with a ubiquitin variant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5047 Å
  • R-Value Free: 0.287 
  • R-Value Work: 0.231 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

A genetically encoded inhibitor of 53BP1 to stimulate homology-based gene editing

Wan, L.Canny, M.Juang, Y.C.Durocher, D.Sicheri, F.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin Variant i53
B
76Homo sapiensMutation(s): 0 
Gene Names: UBA52 (UBCEP2)
Find proteins for P62987 (Homo sapiens)
Go to Gene View: UBA52
Go to UniProtKB:  P62987
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Tumor suppressor p53-binding protein 1
A
117Homo sapiensMutation(s): 0 
Gene Names: TP53BP1
Find proteins for Q12888 (Homo sapiens)
Go to Gene View: TP53BP1
Go to UniProtKB:  Q12888
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5047 Å
  • R-Value Free: 0.287 
  • R-Value Work: 0.231 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 39.531α = 90.00
b = 47.768β = 90.00
c = 94.237γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
XDSdata reduction
PHENIXrefinement
XDSdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
CIHR Foundation GrantCanadaFDN 143277

Revision History 

  • Version 1.0: 2016-12-14
    Type: Initial release
  • Version 1.1: 2016-12-21
    Type: Data collection
  • Version 1.2: 2017-09-27
    Type: Data collection