Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Hetero 4-mer - A2B2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 148312.02 
• Atom Count: 9390 
• Residue Count: 1320 
• Unique protein chains: 2

5IU0

Rubisco from Arabidopsis thaliana

• DOI: 10.2210/pdb5IU0/pdb

• Classification: LYASE
• Organism(s): Arabidopsis thaliana


• Deposited: 2016-03-17 Released: 2017-07-12 
• Deposition Author(s): Valegaard, K., Hasse, D., Gunn, L., Andersson, I.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.499 Å
• R-Value Free: 0.152 
• R-Value Work: 0.136 

Literature

Structure of Rubisco from Arabidopsis thaliana in complex with 2-carboxyarabinitol-1,5-bisphosphate.

Valegard, K., Hasse, D., Andersson, I., Gunn, L.H.

(2018) Acta Crystallogr D Struct Biol 74: 1-9

• PubMed: 29372894 

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Ribulose bisphosphate carboxylase large chain	A, B	479	Arabidopsis thaliana	Mutation(s): 0  Gene Names: rbcL EC: 4.1.1.39
Find proteins for O03042 (Arabidopsis thaliana) Go to UniProtKB:  O03042

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Ribulose bisphosphate carboxylase small chain 1B, chloroplastic	J, I	181	Arabidopsis thaliana	Mutation(s): 0  Gene Names: RBCS-1B (ATS1B) EC: 4.1.1.39
Find proteins for P10796 (Arabidopsis thaliana) Go to UniProtKB:  P10796

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
EDO	A, B, I	1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N
MG	A, B	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N
CAP	A, B	2-CARBOXYARABINITOL-1,5-DIPHOSPHATE C6 H14 O13 P2 ITHCSGCUQDMYAI-ZMIZWQJLSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
KCX	A, B	L-PEPTIDE LINKING	C7 H14 N2 O4		LYS

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.499 Å
• R-Value Free: 0.152 
• R-Value Work: 0.136 
• Space Group: I 4

Unit Cell:

Length (Å)	Angle (°)
a = 111.860	α = 90.00
b = 111.860	β = 90.00
c = 197.710	γ = 90.00

Software Package:

Software Name	Purpose
PHASER	phasing
XSCALE	data scaling
PHENIX	refinement
XDS	data reduction

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2016-03-17 
• Released Date: 2017-07-12 
• Deposition Author(s): Valegaard, K., Hasse, D., Gunn, L., Andersson, I.

Revision History 

• Version 1.0: 2017-07-12
  Type: Initial release
• Version 1.1: 2018-01-03
  Type: Database references
• Version 1.2: 2018-02-07
  Type: Database references