5IP2

Tomato spotted wilt tospovirus nucleocapsid protein-ssRNA complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.317 
  • R-Value Work: 0.282 

wwPDB Validation 3D Report Full Report


This is version 2.1 of the entry. See complete history

Literature

Crystal structure of TSWV nucleocapsid protein

Komoda, K.Narita, M.Yamashita, K.Tanaka, I.Yao, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nucleoprotein
B, C, A
279Tomato spotted wilt virusGene Names: N
Find proteins for F4ZD19 (Tomato spotted wilt virus)
Go to UniProtKB:  F4ZD19
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')E19synthetic construct
Entity ID: 3
MoleculeChainsLengthOrganism
RNA (5'-D(P*UP*UP*U)-3')F,D3synthetic construct
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.317 
  • R-Value Work: 0.282 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 68.208α = 90.00
b = 94.732β = 112.60
c = 70.917γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata processing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-03-22
    Type: Initial release
  • Version 2.0: 2017-06-14
    Type: Advisory, Atomic model, Data collection, Database references, Derived calculations, Polymer sequence
  • Version 2.1: 2017-10-11
    Type: Data collection