5IC3

CAL PDZ domain with peptide and inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.174 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

CAL PDZ domain with peptide and inhibitor

Zhao, Y.Madden, D.R.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Golgi-associated PDZ and coiled-coil motif-containing protein
A, B
87Homo sapiensMutation(s): 0 
Gene Names: GOPC (CAL, FIG)
Find proteins for Q9HD26 (Homo sapiens)
Go to Gene View: GOPC
Go to UniProtKB:  Q9HD26
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HPV18E6 Peptide
C, D
10Human papillomavirus type 18Mutation(s): 0 
Gene Names: E6
Find proteins for P06463 (Human papillomavirus type 18)
Go to UniProtKB:  P06463
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PQR
Query on PQR

Download SDF File 
Download CCD File 
A
4-[methyl(nitroso)amino]benzene-1,2-diol
Methyl-3,4-dephostatin
C7 H8 N2 O3
XAKAQCMEMMZUEO-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.174 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 32.772α = 90.00
b = 48.252β = 101.47
c = 51.639γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
XDSdata scaling
XDSdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2016-02-22 
  • Released Date: 2017-08-09 
  • Deposition Author(s): Zhao, Y., Madden, D.R.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney DiseaseUnited StatesR01-DK101541

Revision History 

  • Version 1.0: 2017-08-09
    Type: Initial release
  • Version 1.1: 2017-09-13
    Type: Author supporting evidence