5I87

Crystal structure of BT-CD domains of human acetyl-CoA carboxylase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.70 Å
  • R-Value Free: 0.381 
  • R-Value Work: 0.347 
  • R-Value Observed: 0.348 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The dynamic organization of fungal acetyl-CoA carboxylase.

Hunkeler, M.Stuttfeld, E.Hagmann, A.Imseng, S.Maier, T.

(2016) Nat Commun 7: 11196-11196

  • DOI: https://doi.org/10.1038/ncomms11196
  • Primary Citation of Related Structures:  
    5I6E, 5I6F, 5I6G, 5I6H, 5I6I, 5I87

  • PubMed Abstract: 

    Acetyl-CoA carboxylases (ACCs) catalyse the committed step in fatty-acid biosynthesis: the ATP-dependent carboxylation of acetyl-CoA to malonyl-CoA. They are important regulatory hubs for metabolic control and relevant drug targets for the treatment of the metabolic syndrome and cancer. Eukaryotic ACCs are single-chain multienzymes characterized by a large, non-catalytic central domain (CD), whose role in ACC regulation remains poorly characterized. Here we report the crystal structure of the yeast ACC CD, revealing a unique four-domain organization. A regulatory loop, which is phosphorylated at the key functional phosphorylation site of fungal ACC, wedges into a crevice between two domains of CD. Combining the yeast CD structure with intermediate and low-resolution data of larger fragments up to intact ACCs provides a comprehensive characterization of the dynamic fungal ACC architecture. In contrast to related carboxylases, large-scale conformational changes are required for substrate turnover, and are mediated by the CD under phosphorylation control.


  • Organizational Affiliation

    Department Biozentrum, University of Basel, Klingelbergstrasse 50/70, 4056 Basel, Switzerland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
BT-CD domains of human acetyl-CoA carboxylase723Homo sapiensMutation(s): 0 
EC: 6.4.1.2
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
BT-CD domains of human acetyl-CoA carboxylase662Homo sapiensMutation(s): 0 
EC: 6.4.1.2
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.70 Å
  • R-Value Free: 0.381 
  • R-Value Work: 0.347 
  • R-Value Observed: 0.348 
  • Space Group: I 41 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 267.27α = 90
b = 267.27β = 90
c = 210.61γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
SHELXCDphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland138262
Swiss National Science FoundationSwitzerland159696
Swiss National Science FoundationSwitzerland145023

Revision History  (Full details and data files)

  • Version 1.0: 2016-04-20
    Type: Initial release
  • Version 1.1: 2016-04-27
    Changes: Database references