5I6H | pdb_00005i6h

Crystal structure of CD-CT domains of Chaetomium thermophilum acetyl-CoA carboxylase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 7.20 Å
  • R-Value Free: 
    0.248 (Depositor), 0.280 (DCC) 
  • R-Value Work: 
    0.232 (Depositor), 0.261 (DCC) 
  • R-Value Observed: 
    0.233 (Depositor) 

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

The dynamic organization of fungal acetyl-CoA carboxylase.

Hunkeler, M.Stuttfeld, E.Hagmann, A.Imseng, S.Maier, T.

(2016) Nat Commun 7: 11196-11196

  • DOI: https://doi.org/10.1038/ncomms11196
  • Primary Citation Related Structures: 
    5I6E, 5I6F, 5I6G, 5I6H, 5I6I, 5I87

  • PubMed Abstract: 

    Acetyl-CoA carboxylases (ACCs) catalyse the committed step in fatty-acid biosynthesis: the ATP-dependent carboxylation of acetyl-CoA to malonyl-CoA. They are important regulatory hubs for metabolic control and relevant drug targets for the treatment of the metabolic syndrome and cancer. Eukaryotic ACCs are single-chain multienzymes characterized by a large, non-catalytic central domain (CD), whose role in ACC regulation remains poorly characterized. Here we report the crystal structure of the yeast ACC CD, revealing a unique four-domain organization. A regulatory loop, which is phosphorylated at the key functional phosphorylation site of fungal ACC, wedges into a crevice between two domains of CD. Combining the yeast CD structure with intermediate and low-resolution data of larger fragments up to intact ACCs provides a comprehensive characterization of the dynamic fungal ACC architecture. In contrast to related carboxylases, large-scale conformational changes are required for substrate turnover, and are mediated by the CD under phosphorylation control.


  • Organizational Affiliation
    • Department Biozentrum, University of Basel, Klingelbergstrasse 50/70, 4056 Basel, Switzerland.

Macromolecule Content 

  • Total Structure Weight: 338.66 kDa 
  • Atom Count: 22,543 
  • Modeled Residue Count: 2,810 
  • Deposited Residue Count: 2,974 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Acetyl-CoA carboxylase-like protein
A, B
1,487Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0021690
UniProt
Find proteins for G0S3L5 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S3L5 
Go to UniProtKB:  G0S3L5
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S3L5
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 7.20 Å
  • R-Value Free:  0.248 (Depositor), 0.280 (DCC) 
  • R-Value Work:  0.232 (Depositor), 0.261 (DCC) 
  • R-Value Observed: 0.233 (Depositor) 
Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 295.02α = 90
b = 295.02β = 90
c = 189.52γ = 120
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland138262
Swiss National Science FoundationSwitzerland159696
Swiss National Science FoundationSwitzerland145023

Revision History  (Full details and data files)

  • Version 1.0: 2016-04-20
    Type: Initial release
  • Version 1.1: 2016-04-27
    Changes: Database references
  • Version 1.2: 2024-01-10
    Changes: Data collection, Database references, Refinement description
  • Version 1.3: 2024-10-09
    Changes: Structure summary