5HDN

Crystal structure of heat shock factor1-DBD complex with ds-DNA and TtT


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.174 
  • R-Value Observed: 0.175 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

HSF1-DBD crystal structure

Feng, H.Liu, W.Wang, D.C.

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Heat shock factor protein 1ABCD112Homo sapiensMutation(s): 0 
Gene Names: HSF1HSTF1
Find proteins for Q00613 (Homo sapiens)
Explore Q00613 
Go to UniProtKB:  Q00613
NIH Common Fund Data Resources
PHAROS  Q00613
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*GP*GP*TP*TP*CP*TP*AP*GP*AP*AP*CP*C)-3')E, F, G, H12Homo sapiens
    Small Molecules
    Ligands 2 Unique
    IDChainsName / Formula / InChI Key2D Diagram3D Interactions
    CIT
    Query on CIT

    Download CCD File 
    A
    CITRIC ACID
    C6 H8 O7
    KRKNYBCHXYNGOX-UHFFFAOYSA-N
     Ligand Interaction
    NA
    Query on NA

    Download CCD File 
    A, B, D
    SODIUM ION
    Na
    FKNQFGJONOIPTF-UHFFFAOYSA-N
     Ligand Interaction
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 1.68 Å
    • R-Value Free: 0.202 
    • R-Value Work: 0.174 
    • R-Value Observed: 0.175 
    • Space Group: P 1 21 1
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 39.415α = 90
    b = 127.367β = 100.55
    c = 55.268γ = 90
    Software Package:
    Software NamePurpose
    PHENIXrefinement
    XSCALEdata reduction
    XDSdata scaling
    XDSphasing

    Structure Validation

    View Full Validation Report



    Entry History 

    Deposition Data

    Revision History 

    • Version 1.0: 2017-01-11
      Type: Initial release
    • Version 1.1: 2017-09-27
      Changes: Data collection