5H10 | pdb_00005h10

TRAF1-TANk complex

• PDB DOI: https://doi.org/10.2210/pdb5H10/pdb

• Classification: SIGNALING PROTEIN/INHIBITOR
• Organism(s): Homo sapiens, Peptide display vector fth1
• Expression System: Escherichia coli-Pichia pastoris shuttle vector pPpARG4
• Mutation(s): No 


• Deposited: 2016-10-07 Released: 2017-10-11 
• Deposition Author(s): Kim, C.M., Park, H.H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.21 Å
• R-Value Free: 
  0.270 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.218 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.224 (Depositor) 

Starting Model: experimental

Literature

TRAF1-TANk complex

Kim, C.M., Park, H.H.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Hetero 6-mer - A3B3 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 6-mer - A3B1C1D1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 73.74 kDa 
• Atom Count: 4,808 
• Modelled Residue Count: 598 
• Deposited Residue Count: 639 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TNF receptor-associated factor 1	A, B, C	205	Homo sapiens	Mutation(s): 0  Gene Names: TRAF1, EBI6
UniProt & NIH Common Fund Data Resources
Find proteins for Q13077 (Homo sapiens) Explore Q13077  Go to UniProtKB:  Q13077
PHAROS:  Q13077 GTEx:  ENSG00000056558

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
TRAF family member-associated NF-kappaB activator	D, E, F	8	Peptide display vector fth1	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q92844 (Homo sapiens) Explore Q92844  Go to UniProtKB:  Q92844
PHAROS:  Q92844 GTEx:  ENSG00000136560

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.21 Å
• R-Value Free:  0.270 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.218 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.224 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.21	α = 90
b = 79.034	β = 90
c = 113.38	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
SCALEPACK	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-10-11 
Deposition Author(s): Kim, C.M., Park, H.H.

Revision History  

• Version 1.0: 2017-10-11
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Refinement description