Annotations: 5H10

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Trimerization domain of TRAF	8090577	3001589	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TRAF domain-like	8089590	3001027	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TRAF domain-like	8089590	3001027	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Trimerization domain of TRAF	8090577	3001589	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TRAF domain-like	8089590	3001027	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Trimerization domain of TRAF	8090577	3001589	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF21355	e5h10A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: TRAF domain-like (From Topology)	T: TRAF domain-like	F: PF21355	ECOD (1.6)
B	PF21355	e5h10B1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: TRAF domain-like (From Topology)	T: TRAF domain-like	F: PF21355	ECOD (1.6)
C	PF21355	e5h10C1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: TRAF domain-like (From Topology)	T: TRAF domain-like	F: PF21355	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.210.10	Mainly Beta	Sandwich	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2	Chain A	CATH (4.3.0)
B	2.60.210.10	Mainly Beta	Sandwich	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2	Chain A	CATH (4.3.0)
C	2.60.210.10	Mainly Beta	Sandwich	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF21355	TRAF/meprin, MATH domain (TRAF-mep_MATH)	TRAF/meprin, MATH domain	Intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the the meprin and TRAF homology (MATH) domain which adopts a beta-sandwich structure. This is the MATH domain of TNF receptor-associated factors (TRAFs) an ...	Intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the the meprin and TRAF homology (MATH) domain which adopts a beta-sandwich structure. This is the MATH domain of TNF receptor-associated factors (TRAFs) and meprins. In TRAFS, it is essential for self-association and receptor interaction [1-3]. Meprins are mammalian tissue-specific metalloendopeptidases involved developmental, normal and pathological processes.	Domain
A, B, C	PF16673	TNF receptor-associated factor BIRC3 binding domain (TRAF_BIRC3_bd)	TNF receptor-associated factor BIRC3 binding domain	-	Coiled-coil
D, E, F	PF12845	TBD domain (TBD)	TBD domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	TNF receptor-associated factor 1	ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding thioesterase binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding signaling receptor binding cytokine receptor binding ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding thioesterase binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding signaling receptor binding cytokine receptor binding tumor necrosis factor receptor superfamily binding tumor necrosis factor receptor binding identical protein binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis positive regulation of DNA-binding transcription factor activity regulation of cellular process cellular biosynthetic process positive regulation of NF-kappaB transcription factor activity RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis positive regulation of DNA-binding transcription factor activity regulation of cellular process cellular biosynthetic process positive regulation of NF-kappaB transcription factor activity RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process positive regulation of molecular function nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process cellular metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process regulation of molecular function organic cyclic compound metabolic process regulation of gene expression biosynthetic process regulation of DNA-binding transcription factor activity organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process organonitrogen compound metabolic process protein polyubiquitination protein K63-linked ubiquitination protein ubiquitination macromolecule modification protein metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal cellular response to stimulus response to organic substance response to stimulus cell surface receptor signaling pathway signaling response to cytokine cytokine-mediated signaling pathway cell communication cellular response to chemical stimulus cellular response to tumor necrosis factor response to chemical tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus cellular response to organic substance signal transduction response to tumor necrosis factor apoptotic process cell death programmed cell death regulation of signal transduction regulation of programmed cell death extrinsic apoptotic signaling pathway regulation of signaling regulation of apoptotic process regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway regulation of response to stimulus regulation of cell communication regulation of apoptotic signaling pathway intracellular signal transduction canonical NF-kappaB signal transduction regulation of intracellular signal transduction intracellular signaling cassette regulation of canonical NF-kappaB signal transduction	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cell periphery cytoplasmic side of plasma membrane cytoplasmic side of membrane membrane plasma membrane side of membrane
D, E, F	TRAF family member-associated NF-kappaB activator	molecular function inhibitor activity molecular function regulator activity enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity deubiquitinase activator activity peptidase activator activity molecular adaptor activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding molecular function inhibitor activity molecular function regulator activity enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity deubiquitinase activator activity peptidase activator activity molecular adaptor activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding cation binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of biological process regulation of cellular process signaling biological regulation canonical NF-kappaB signal transduction intracellular signal transduction cell communication intracellular signaling cassette cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of biological process regulation of cellular process signaling biological regulation canonical NF-kappaB signal transduction intracellular signal transduction cell communication intracellular signaling cassette signal transduction negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process negative regulation of canonical NF-kappaB signal transduction regulation of signal transduction negative regulation of cell communication regulation of intracellular signal transduction negative regulation of cellular process regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction response to ionizing radiation cellular response to ionizing radiation response to radiation response to abiotic stimulus cellular response to radiation cellular response to abiotic stimulus cellular response to environmental stimulus protein deubiquitination regulation of protein modification process positive regulation of protein metabolic process positive regulation of biological process positive regulation of post-translational protein modification regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process organic substance metabolic process protein modification by small protein removal positive regulation of macromolecule metabolic process protein metabolic process protein modification process regulation of protein modification by small protein conjugation or removal positive regulation of protein modification by small protein conjugation or removal organonitrogen compound metabolic process regulation of post-translational protein modification regulation of protein metabolic process positive regulation of protein deubiquitination primary metabolic process regulation of macromolecule metabolic process regulation of protein deubiquitination macromolecule modification metabolic process macromolecule metabolic process post-translational protein modification regulation of metabolic process protein modification by small protein conjugation or removal response to organic substance response to cytokine cellular response to chemical stimulus cellular response to tumor necrosis factor response to chemical cellular response to cytokine stimulus cellular response to organic substance response to tumor necrosis factor regulation of catalytic activity positive regulation of peptidase activity positive regulation of molecular function regulation of proteolysis proteolysis positive regulation of ubiquitin-specific protease activity regulation of ubiquitin-specific protease activity regulation of peptidase activity positive regulation of catalytic activity regulation of molecular function positive regulation of hydrolase activity regulation of hydrolase activity positive regulation of proteolysis biological process involved in interspecies interaction between organisms response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus defense response to virus defense response to other organism response to external biotic stimulus response to virus multicellular organismal process cellular biosynthetic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of biosynthetic process cytokine production organic substance biosynthetic process regulation of cytokine production regulation of multicellular organismal process positive regulation of cellular process regulation of biosynthetic process positive regulation of type I interferon production type I interferon production cellular metabolic process regulation of cellular metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process positive regulation of cytokine production positive regulation of cellular biosynthetic process regulation of type I interferon production cellular response to interleukin-1 response to interleukin-1 cytokine-mediated signaling pathway tumor necrosis factor-mediated signaling pathway cell surface receptor signaling pathway regulation of tumor necrosis factor-mediated signaling pathway regulation of cytokine-mediated signaling pathway negative regulation of tumor necrosis factor-mediated signaling pathway regulation of response to cytokine stimulus negative regulation of response to cytokine stimulus negative regulation of cytokine-mediated signaling pathway interferon-mediated signaling pathway cellular response to type I interferon innate immune response immune response immune system process type I interferon-mediated signaling pathway response to type I interferon	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex protein kinase complex transferase complex, transferring phosphorus-containing groups catalytic complex serine/threonine protein kinase complex transferase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR037306	TNF receptor-associated factor 1, MATH domain	Domain
A, B, C	IPR012227	TNF receptor-associated factor TRAF, metazoa	Family
A, B, C	IPR032070	TNF receptor-associated factor, BIRC3 binding domain	Domain
A, B, C	IPR008974	TRAF-like	Homologous Superfamily
A, B, C	IPR002083	MATH/TRAF domain	Domain
A, B, C	IPR049342	TRAF1-6/MEP1A/B-like, MATH domain	Domain
D, E, F	IPR039669	TRAF family member-associated NF-kappa-B activator	Family
D, E, F	IPR024581	Tbk1/Ikki binding domain	Domain
D, E, F	IPR041641	CALCOCO1/2, zinc finger UBZ1-type	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C	Pharos: Q13077	rheumatoid arthritis patent ductus arteriosus juvenile idiopathic arthritis prostate cancer Abortion, Spontaneous alopecia areata ulcerative colitis glioblastoma osteosarcoma allergic rhinitis interstitial cystitis tuberculosis
D, E, F	Pharos: Q92844	breast carcinoma breast cancer pancreatic intraductal papillary-mucinous neoplasm attention deficit hyperactivity disorder, inattentive type Gaucher disease juvenile dermatomyositis malignant glioma Mammary Neoplasms, Human osteosarcoma psoriasis atypical teratoid rhabdoid tumor Emery-Dreifuss muscular dystrophy glioblastoma large cell medulloblastoma medulloblastoma breast carcinoma breast cancer pancreatic intraductal papillary-mucinous neoplasm attention deficit hyperactivity disorder, inattentive type Gaucher disease juvenile dermatomyositis malignant glioma Mammary Neoplasms, Human osteosarcoma psoriasis atypical teratoid rhabdoid tumor Emery-Dreifuss muscular dystrophy glioblastoma large cell medulloblastoma medulloblastoma ovarian cancer Sjogren syndrome endogenous depression hypothyroidism lung cancer myopathy

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.