5GZW

Crystal structure of AmpC BER


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.489 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.211 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of a class C beta lactamase/compound complex

Kim, M.K.An, Y.J.Na, J.HCha, S.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamase
A, B
366Escherichia coliMutation(s): 0 
Gene Names: ampC
EC: 3.5.2.6
Find proteins for A0A076YIY5 (Escherichia coli)
Go to UniProtKB:  A0A076YIY5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
AMP
Query on AMP

Download SDF File 
Download CCD File 
A, B
ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.489 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.211 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 61.480α = 90.00
b = 65.039β = 90.00
c = 177.271γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data processing
HKL-2000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2016-10-02 
  • Released Date: 2017-10-11 
  • Deposition Author(s): An, Y.J., Cha, S.S.

Funding OrganizationLocationGrant Number
Korea, Republic Of--

Revision History 

  • Version 1.0: 2017-10-11
    Type: Initial release