5F1G

Crystal structure of a class C beta lactamase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of a class C beta lactamase

Kim, M.K.An, Y.J.Na, J.H.Seol, J.H.Ryu, J.Y.Moon, J.H.Lee, J.S.Cha, S.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamase
A
366Escherichia coliMutation(s): 0 
Gene Names: ampC
EC: 3.5.2.6
Find proteins for A7TUE6 (Escherichia coli)
Go to UniProtKB:  A7TUE6
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
AMP
Query on AMP

Download SDF File 
Download CCD File 
A
ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.172 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 60.478α = 90.00
b = 65.414β = 90.00
c = 106.115γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
Cootmodel building
PHENIXrefinement
HKL-2000data processing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation of KoreaKorea, Republic OfNRF-2015R 1A2A2A 01004168
National Research Foundation of KoreaKorea, Republic OfNRF-2015M 1A5A 1037480
KIOST in-house programsKorea, Republic OfPE99314
KIOST in-house programsKorea, Republic OfPE99302

Revision History 

  • Version 1.0: 2016-12-07
    Type: Initial release