5FST

Structure of lysozyme prepared by the 'soak-and-freeze' method under 100 bar of krypton pressure


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.134 
  • R-Value Work: 0.109 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Gas-Sensitive Biological Crystals Processed in Pressurized Oxygen and Krypton Atmospheres: Deciphering Gas Channels in Proteins Using a Novel `Soak-and-Freeze' Methodology.

Lafumat, B.Mueller-Dieckmann, C.Colloc'h, N.Prange, T.Royant, A.van der Linden, P.Carpentier, P.

(2016) J.Appl.Crystallogr. 49: 1478


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
LYSOZYME C
A
129Gallus gallusMutation(s): 0 
Gene Names: LYZ
EC: 3.2.1.17
Find proteins for P00698 (Gallus gallus)
Go to Gene View: LYZ
Go to UniProtKB:  P00698
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
KR
Query on KR

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Download CCD File 
A
KRYPTON
Kr
DNNSSWSSYDEUBZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.134 
  • R-Value Work: 0.109 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 79.001α = 90.00
b = 79.001β = 90.00
c = 37.053γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
MOLREPphasing
REFMACrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-10-26
    Type: Initial release
  • Version 1.1: 2016-11-16
    Type: Structure summary
  • Version 1.2: 2017-05-10
    Type: Structure summary
  • Version 1.3: 2018-02-21
    Type: Database references, Structure summary