5EK6

Thermostable aldehyde dehydrogenase from Pyrobaculum sp. 1860 complexed with NADP and isobutyraldehyde


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.66 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

NADP-Dependent Aldehyde Dehydrogenase from ArchaeonPyrobaculum sp.1860: Structural and Functional Features.

Bezsudnova, E.Y.Petrova, T.E.Artemova, N.V.Boyko, K.M.Shabalin, I.G.Rakitina, T.V.Polyakov, K.M.Popov, V.O.

(2016) Archaea 2016: 9127857-9127857


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Aldehyde dehydrogenase
A, B, C, D, E, F, G, H
491Pyrobaculum ferrireducensMutation(s): 0 
Find proteins for G7VCG0 (Pyrobaculum ferrireducens)
Go to UniProtKB:  G7VCG0
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAP
Query on NAP

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
 Ligand Interaction
5OZ
Query on 5OZ

Download SDF File 
Download CCD File 
A, B, C, D, G, H
2-methylpropanal
Isobutyraldehyde
C4 H8 O
AMIMRNSIRUDHCM-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.66 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.189 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 183.800α = 90.00
b = 207.850β = 90.00
c = 166.440γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
BALBESphasing
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
RFBRRussian Federation13-04-00798/13

Revision History 

  • Version 1.0: 2016-11-16
    Type: Initial release
  • Version 1.1: 2018-06-20
    Type: Data collection, Database references