Crystal structure Colocasia esculenta tuber agglutinin at 1.74A resolution and its quaternary interactions
Chattopadhyaya, R., Biswas, H., Sarkar, A.(2017) J Glycobiol 6: 1000126-1000126
Experimental Data Snapshot
Starting Model: experimental
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(2017) J Glycobiol 6: 1000126-1000126
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tuber agglutinin | 109 | Colocasia esculenta | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for R9RL27 (Colocasia esculenta) Explore R9RL27  Go to UniProtKB:  R9RL27 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | R9RL27 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Tuber agglutinin | 111 | Colocasia esculenta | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for R9RL27 (Colocasia esculenta) Explore R9RL27  Go to UniProtKB:  R9RL27 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | R9RL27 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EPE Query on EPE | F [auth A] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N | |||
SO4 Query on SO4 | H [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
MG Query on MG | E [auth A], G [auth A], I [auth B], J [auth B], K [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 122.012 | α = 90 |
b = 47.198 | β = 90 |
c = 82.251 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
PDB_EXTRACT | data extraction |
d*TREK | data reduction |
d*TREK | data scaling |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Department of Science and Technology | India | none |