5D5G | pdb_00005d5g

Structure of colocasia esculenta agglutinin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5d5gd_	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	automated matches	automated matches	(Colocasia esculenta ) [TaxId: 4460 ],	SCOPe (2.08)
B	d5d5gb_	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	automated matches	automated matches	(Colocasia esculenta ) [TaxId: 4460 ],	SCOPe (2.08)
C	d5d5gc_	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	automated matches	automated matches	(Colocasia esculenta ) [TaxId: 4460 ],	SCOPe (2.08)
A	d5d5ga_	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	automated matches	automated matches	(Colocasia esculenta ) [TaxId: 4460 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8079841	3001730	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8079841	3001730	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	DEAD_2	e5d5gD1	A: a/b three-layered sandwiches	X: ssDNA-binding transcriptional regulator domain-like	H: ssDNA-binding transcriptional regulator domain	T: ssDNA-binding transcriptional regulator domain	F: DEAD_2	ECOD (v294.1)
B	DEAD_2	e5d5gB1	A: a/b three-layered sandwiches	X: ssDNA-binding transcriptional regulator domain-like	H: ssDNA-binding transcriptional regulator domain	T: ssDNA-binding transcriptional regulator domain	F: DEAD_2	ECOD (v294.1)
C	DEAD_2	e5d5gC1	A: a/b three-layered sandwiches	X: ssDNA-binding transcriptional regulator domain-like	H: ssDNA-binding transcriptional regulator domain	T: ssDNA-binding transcriptional regulator domain	F: DEAD_2	ECOD (v294.1)
A	DEAD_2	e5d5gA1	A: a/b three-layered sandwiches	X: ssDNA-binding transcriptional regulator domain-like	H: ssDNA-binding transcriptional regulator domain	T: ssDNA-binding transcriptional regulator domain	F: DEAD_2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
B	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
C	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
A	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Tuber agglutinin	binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding cation binding ion binding metal ion binding	biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to external stimulus response to external biotic stimulus response to biotic stimulus	cellular anatomical structure extracellular region
A, C	Tuber agglutinin	binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding cation binding ion binding metal ion binding	biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to external stimulus response to external biotic stimulus response to biotic stimulus	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR001480	Bulb-type lectin domain	Domain
B, D	IPR036426	Bulb-type lectin domain superfamily	Homologous Superfamily
A, C	IPR001480	Bulb-type lectin domain	Domain
A, C	IPR036426	Bulb-type lectin domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.