5CI9

Crystal structure of human Tob in complex with inhibitor fragment 6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.214 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis for inhibition of the Tob-CNOT7 interaction by a fragment screening approach

Bai, Y.Tashiro, S.Nagatoishi, S.Suzuki, T.Yan, D.Liu, R.Tsumoto, K.Bartlam, M.Yamamoto, T.

(2015) Protein Cell 6: 924-928


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein Tob1
A
346Homo sapiensMutation(s): 0 
Gene Names: TOB1 (TOB, TROB1)
Find proteins for P50616 (Homo sapiens)
Go to Gene View: TOB1
Go to UniProtKB:  P50616
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
549
Query on 549

Download SDF File 
Download CCD File 
A
1-(propan-2-yl)-1H-benzimidazole-5-carboxylic acid
C11 H12 N2 O2
SQIQIYYPWAELAC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.214 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 65.119α = 90.00
b = 65.119β = 90.00
c = 162.945γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and TechnologyChina2014CB560709
Ministry of Education, Culture, Sports, Science and Technology, JapanJapan--
KAKENHIJapan25121734

Revision History 

  • Version 1.0: 2015-11-18
    Type: Initial release
  • Version 1.1: 2015-12-09
    Type: Database references