5CI8

Crystal structure of human Tob in complex with inhibitor fragment 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.328 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.232 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis for inhibition of the Tob-CNOT7 interaction by a fragment screening approach

Bai, Y.Tashiro, S.Nagatoishi, S.Suzuki, T.Yan, D.Liu, R.Tsumoto, K.Bartlam, M.Yamamoto, T.

(2015) Protein Cell 6: 924-928


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein Tob1
A
347Homo sapiensMutation(s): 0 
Gene Names: TOB1 (TOB, TROB1)
Find proteins for P50616 (Homo sapiens)
Go to Gene View: TOB1
Go to UniProtKB:  P50616
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
53Y
Query on 53Y

Download SDF File 
Download CCD File 
A
pyrrolo[1,2-a]quinoxalin-4(5H)-one
C11 H8 N2 O
LINHQLFBBDHSEJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.328 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.232 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 64.975α = 90.00
b = 64.975β = 90.00
c = 163.677γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and TechnologyChina2014CB560709
Ministry of Education, Culture, Sports, Science and Technology, JapanJapan--
KAKENHIJapan25121734

Revision History 

  • Version 1.0: 2015-11-18
    Type: Initial release
  • Version 1.1: 2015-12-09
    Type: Database references