5C8C

Crystal structure of recombinant coxsackievirus A16 capsid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.172 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structures of Coxsackievirus A16 Capsids with Native Antigenicity: Implications for Particle Expansion, Receptor Binding, and Immunogenicity.

Ren, J.Wang, X.Zhu, L.Hu, Z.Gao, Q.Yang, P.Li, X.Wang, J.Shen, X.Fry, E.E.Rao, Z.Stuart, D.I.

(2015) J.Virol. 89: 10500-10511


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
VP1
A
297Coxsackievirus A16 (strain Tainan/5079/98)Mutation(s): 0 
Find proteins for Q9QF31 (Coxsackievirus A16 (strain Tainan/5079/98))
Go to UniProtKB:  Q9QF31
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
VP0
B
323Coxsackievirus A16 (strain Tainan/5079/98)Mutation(s): 0 
Find proteins for Q9QF31 (Coxsackievirus A16 (strain Tainan/5079/98))
Go to UniProtKB:  Q9QF31
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
VP3
C
242Coxsackievirus A16 (strain Tainan/5079/98)Mutation(s): 0 
Find proteins for Q9QF31 (Coxsackievirus A16 (strain Tainan/5079/98))
Go to UniProtKB:  Q9QF31
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
A
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
STE
Query on STE

Download SDF File 
Download CCD File 
A
STEARIC ACID
C18 H36 O2
QIQXTHQIDYTFRH-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.172 
  • R-Value Work: 0.164 
  • Space Group: P 42 3 2
Unit Cell:
Length (Å)Angle (°)
a = 347.900α = 90.00
b = 347.900β = 90.00
c = 347.900γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data scaling
CNSrefinement
CNSphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-09-30
    Type: Initial release
  • Version 1.1: 2015-10-07
    Type: Database references
  • Version 1.2: 2019-04-03
    Type: Data collection, Source and taxonomy