5C4W

Crystal structure of coxsackievirus A16


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.278 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structures of Coxsackievirus A16 Capsids with Native Antigenicity: Implications for Particle Expansion, Receptor Binding, and Immunogenicity.

Ren, J.Wang, X.Zhu, L.Hu, Z.Gao, Q.Yang, P.Li, X.Wang, J.Shen, X.Fry, E.E.Rao, Z.Stuart, D.I.

(2015) J.Virol. 89: 10500-10511


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
VP1
A
297Coxsackievirus A16Mutation(s): 0 
Find proteins for I3W9E1 (Coxsackievirus A16)
Go to UniProtKB:  I3W9E1
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
VP2
B
254Coxsackievirus A16Mutation(s): 0 
Find proteins for I3W9E1 (Coxsackievirus A16)
Go to UniProtKB:  I3W9E1
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
VP3
C
242Coxsackievirus A16Mutation(s): 0 
Find proteins for I3W9E1 (Coxsackievirus A16)
Go to UniProtKB:  I3W9E1
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
VP4
D
69Coxsackievirus A16Mutation(s): 0 
Find proteins for I3W9E1 (Coxsackievirus A16)
Go to UniProtKB:  I3W9E1
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
A
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
SPH
Query on SPH

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Download CCD File 
A
SPHINGOSINE
C18 H37 N O2
WWUZIQQURGPMPG-MSOLQXFVSA-N
 Ligand Interaction
NA
Query on NA

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Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A, B, C, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.278 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 491.200α = 90.00
b = 491.200β = 90.00
c = 708.700γ = 90.00
Software Package:
Software NamePurpose
CNSphasing
HKL-2000data scaling
CNSrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-08-26
    Type: Initial release
  • Version 1.1: 2015-09-30
    Type: Database references