5C3Y

Structure of human ribokinase crystallized with AMPPNP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of human ribokinase crystallized with AMPPNP

Park, J.Chakrabarti, J.Singh, B.Gupta, R.S.Junop, M.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ribokinase
A, B, C, D, E, F, G, H, I, J, K, L
330Homo sapiensMutation(s): 0 
Gene Names: RBKSRBSK
EC: 2.7.1.15
Find proteins for Q9H477 (Homo sapiens)
Go to UniProtKB:  Q9H477
NIH Common Fund Data Resources
PHAROS  Q9H477
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
AN2
Query on AN2

Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L
AMP PHOSPHORAMIDATE
C10 H16 N6 O9 P2
FQMDCEJHLOLKLI-KQYNXXCUSA-N
 Ligand Interaction
NA
Query on NA

Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.206 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 80.31α = 90
b = 168.14β = 90.82
c = 161.5γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-06-15
    Type: Initial release
  • Version 1.1: 2017-04-26
    Changes: Database references, Structure summary