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Miles, L.A.To be published.
5BUO
A receptor molecule
- PDB DOI: 10.2210/pdb5BUO/pdb
- Classification: METAL TRANSPORT
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2015-06-04 Released: 2016-07-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.31 Å
- R-Value Free: 0.241
- R-Value Work: 0.230
- R-Value Observed: 0.230
wwPDB Validation 3D Report Full Report
This is version 2.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Amyloid beta A4 protein | A, B | 342 | Homo sapiens | Mutation(s): 0 Gene Names: APP, A4, AD1 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P05067 (Homo sapiens) Explore P05067 Go to UniProtKB: P05067 | |||||
PHAROS: P05067 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P05067 | ||||
Protein Feature ViewExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
| 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose | C | 2 |  | N/A | Oligosaccharides Interaction |
Glycosylation Resources | |||||
GlyTouCan: G55525GN GlyCosmos: G55525GN GlyGen: G55525GN | |||||
Small Molecules
| Ligands 7 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | R [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| GOL Query on GOL | K [auth A], L [auth A], M [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| ZN Query on ZN | D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| ACT Query on ACT | N [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | Ligand Interaction | |
| SCN Query on SCN | O [auth A], P [auth A], Q [auth A] | THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M |  | Ligand Interaction | |
| CA Query on CA | J [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
| MG Query on MG | S [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.31 Å
- R-Value Free: 0.241
- R-Value Work: 0.230
- R-Value Observed: 0.230
- Space Group: I 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.41 | α = 90 |
| b = 103.05 | β = 90 |
| c = 108.85 | γ = 90 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| SCALA | data scaling |
| MOLREP | phasing |
| Coot | model building |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2016-07-13 Deposition Author(s): Gao, C., Crespi, G.A.N., Gorman, M.A., Nero, T.L., Parker, M.W., Miles, L.A.
Revision History (Full details and data files)
- Version 1.0: 2016-07-13
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary
