5B1Z

Crystal structure of Bcl-xL in complex with HBx-BH3 motif

• PDB DOI: https://doi.org/10.2210/pdb5B1Z/pdb

• Classification: APOPTOSIS
• Organism(s): Homo sapiens, Hepatitis B virus
• Expression System: Escherichia coli BL21(DE3), Peptide display vector fth1
• Mutation(s): No 


• Deposited: 2015-12-22 Released: 2016-12-28 
• Deposition Author(s): Yuan, Y.A.
• Funding Organization(s): Ministry of Science and Technology

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 0.274 
• R-Value Work: 0.205 
• R-Value Observed: 0.209 

Literature

Crystal structure of Bcl-xL in complex with HBx-BH3 motif

Yuan, Y.A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 4-mer - A2B2 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 4-mer - A2B1C1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 40.53 kDa 
• Atom Count: 2,765 
• Modelled Residue Count: 322 
• Deposited Residue Count: 352 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bcl-2-like protein 1	A, B	153	Homo sapiens	Mutation(s): 0  Gene Names: BCL2L1, BCL2L, BCLX
UniProt & NIH Common Fund Data Resources
Find proteins for Q07817 (Homo sapiens) Explore Q07817  Go to UniProtKB:  Q07817
PHAROS:  Q07817 GTEx:  ENSG00000171552

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptide from Protein X	C, D	23	Hepatitis B virus	Mutation(s): 0
UniProt
Find proteins for I3XMW8 (Hepatitis B virus) Explore I3XMW8  Go to UniProtKB:  I3XMW8

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 0.274 
• R-Value Work: 0.205 
• R-Value Observed: 0.209 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.708	α = 90
b = 135.317	β = 90
c = 97.593	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2016-12-28 
Deposition Author(s): Yuan, Y.A.

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Funding Organization	Location	Grant Number
Ministry of Science and Technology	China	--

Revision History  

• Version 1.0: 2016-12-28
  Type: Initial release
  
• Version 1.1: 2017-10-04
  Changes: Data collection
• Version 1.2: 2024-03-20
  Changes: Data collection, Database references