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Crystal structure of Bcl-xL in complex with HBx-BH3 motif
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.5 293 1.05M Sodium Citrate, 0.1M CHES pH 9.5
Crystal Properties Matthews coefficient Solvent content 2.07 40.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.708 α = 90 b = 135.317 β = 90 c = 97.593 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2013-04-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 50 99.9 0.089 22.4 6.9 17371
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.19 99.9 4.4 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.15 50 17371 944 97.83 0.20852 0.20509 0.2116 0.27388 0.2765 RANDOM 29.523
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.85 1.62 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.508 r_dihedral_angle_4_deg 18.064 r_dihedral_angle_3_deg 16.67 r_dihedral_angle_1_deg 6.142 r_long_range_B_refined 4.315 r_long_range_B_other 4.284 r_scangle_other 1.781 r_angle_refined_deg 1.651 r_mcangle_it 1.389 r_mcangle_other 1.388
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.508 r_dihedral_angle_4_deg 18.064 r_dihedral_angle_3_deg 16.67 r_dihedral_angle_1_deg 6.142 r_long_range_B_refined 4.315 r_long_range_B_other 4.284 r_scangle_other 1.781 r_angle_refined_deg 1.651 r_mcangle_it 1.389 r_mcangle_other 1.388 r_scbond_it 1.133 r_scbond_other 1.133 r_angle_other_deg 0.891 r_mcbond_it 0.828 r_mcbond_other 0.828 r_chiral_restr 0.095 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2614 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing