5AOQ

Structural basis of neurohormone perception by the receptor tyrosine kinase Torso

• PDB DOI: https://doi.org/10.2210/pdb5AOQ/pdb

• Classification: TRANSFERASE
• Organism(s): Bombyx mori
• Expression System: Trichoplusia ni
• Mutation(s): Yes 


• Deposited: 2015-09-11 Released: 2015-11-25 
• Deposition Author(s): Jenni, S., Goyal, Y., von Grotthuss, M., Shvartsman, S.Y., Klein, D.E.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free: 0.362 
• R-Value Work: 0.342 
• R-Value Observed: 0.343 

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 4-mer - A2B2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 90.03 kDa 
• Atom Count: 5,305 
• Modelled Residue Count: 640 
• Deposited Residue Count: 762 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TORSO	A, B	272	Bombyx mori	Mutation(s): 0  EC: 2.7.10.1
UniProt
Find proteins for D2IYS2 (Bombyx mori) Explore D2IYS2  Go to UniProtKB:  D2IYS2

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
PREPROPTTH	C [auth L], D [auth M]	109	Bombyx mori	Mutation(s): 1
UniProt
Find proteins for P17219 (Bombyx mori) Explore P17219  Go to UniProtKB:  P17219

Oligosaccharides

Help

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	E [auth C], F [auth D]	2		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free: 0.362 
• R-Value Work: 0.342 
• R-Value Observed: 0.343 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.42	α = 90
b = 90.96	β = 90
c = 244.28	γ = 90

Software Package:

Software Name	Purpose
PHASER	model building
XDS	data reduction
XSCALE	data scaling
SHELXD	phasing
SHARP	phasing
RESOLVE	phasing
PHASER	phasing
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-11-25 
Deposition Author(s): Jenni, S., Goyal, Y., von Grotthuss, M., Shvartsman, S.Y., Klein, D.E.

Revision History  

• Version 1.0: 2015-11-25
  Type: Initial release
  
• Version 1.1: 2016-01-13
  Changes: Database references
• Version 2.0: 2017-12-13
  Changes: Atomic model, Database references
• Version 3.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Atomic model, Data collection, Derived calculations, Other, Structure summary