5AJ4

Structure of the 55S mammalian mitoribosome.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 2.1 of the entry. See complete history

Literature

The complete structure of the 55S mammalian mitochondrial ribosome.

Greber, B.J.Bieri, P.Leibundgut, M.Leitner, A.Aebersold, R.Boehringer, D.Ban, N.

(2015) Science 348: 303-308

  • DOI: 10.1126/science.aaa3872
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Mammalian mitochondrial ribosomes (mitoribosomes) synthesize mitochondrially encoded membrane proteins that are critical for mitochondrial function. Here we present the complete atomic structure of the porcine 55S mitoribosome at 3.8 angstrom resolut ...

    Mammalian mitochondrial ribosomes (mitoribosomes) synthesize mitochondrially encoded membrane proteins that are critical for mitochondrial function. Here we present the complete atomic structure of the porcine 55S mitoribosome at 3.8 angstrom resolution by cryo-electron microscopy and chemical cross-linking/mass spectrometry. The structure of the 28S subunit in the complex was resolved at 3.6 angstrom resolution by focused alignment, which allowed building of a detailed atomic structure including all of its 15 mitoribosomal-specific proteins. The structure reveals the intersubunit contacts in the 55S mitoribosome, the molecular architecture of the mitoribosomal messenger RNA (mRNA) binding channel and its interaction with transfer RNAs, and provides insight into the highly specialized mechanism of mRNA recruitment to the 28S subunit. Furthermore, the structure contributes to a mechanistic understanding of aminoglycoside ototoxicity.


    Organizational Affiliation

    Department of Biology, Institute of Molecular Biology and Biophysics, Otto-Stern-Weg 5, ETH Zurich, CH-8093 Zurich, Switzerland.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN US2M, MRPS2
AB
220Sus scrofaMutation(s): 0 
Gene Names: MRPS2
Find proteins for F1S001 (Sus scrofa)
Go to Gene View: MRPS2
Go to UniProtKB:  F1S001
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN US3M, MRPS24
AC
132Sus scrofaMutation(s): 0 
Gene Names: MRPS24
Find proteins for F1ST79 (Sus scrofa)
Go to Gene View: MRPS24
Go to UniProtKB:  F1ST79
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN US5M, MRPS5
AE
328Sus scrofaMutation(s): 0 
Gene Names: MRPS5
Find proteins for F1SU66 (Sus scrofa)
Go to Gene View: MRPS5
Go to UniProtKB:  F1SU66
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BS6M, MRPS6
AF
124N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN US7M, MRPS7
AG
208N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN US9M, MRPS9
AI
311N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN US10M, MRPS10
AJ
201N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN US11M, MRPS11
AK
136N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN US12M, MRPS12
AL
109N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN US14M, MRPS14
AN
128N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN US15M, MRPS15
AO
239N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BS16M, MRPS16
AP
117N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN US17M, MRPS17
AQ
109Sus scrofaMutation(s): 0 
Gene Names: MRPS17
Find proteins for F1RIU0 (Sus scrofa)
Go to Gene View: MRPS17
Go to UniProtKB:  F1RIU0
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BS18M, MRPS18C
AR
97N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BS21M, MRPS21
AU
86N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN MS22, MRPS22
Aa
356N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN MS23, MRPS23
Ab
190N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN MS25, MRPS25
Ac
169N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN MS26, MRPS26
Ad
177Sus scrofaMutation(s): 0 
Gene Names: MRPS26
Find proteins for F1S8A5 (Sus scrofa)
Go to Gene View: MRPS26
Go to UniProtKB:  F1S8A5
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN MS27, MRPS27
Ae
336N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN MS28, MRPS28
Af
188N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN MS29, MRPS29
Ag
397N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN MS31, MRPS31
Ah
103Sus scrofaMutation(s): 0 
Gene Names: MRPS31
Find proteins for F1RME2 (Sus scrofa)
Go to Gene View: MRPS31
Go to UniProtKB:  F1RME2
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN MS33, MRPS33
Ai
99Sus scrofaMutation(s): 0 
Gene Names: MRPS33
Find proteins for F1S8G3 (Sus scrofa)
Go to Gene View: MRPS33
Go to UniProtKB:  F1S8G3
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN MS34, MRPS34
Aj
218N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN MS35, MRPS35
Ak
275Sus scrofaMutation(s): 0 
Gene Names: MRPS35
Find proteins for F1SG95 (Sus scrofa)
Go to Gene View: MRPS35
Go to UniProtKB:  F1SG95
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN MS37, MRPS37
Am
116Sus scrofaMutation(s): 0 
Gene Names: CHCHD1
Find proteins for F1SU49 (Sus scrofa)
Go to Gene View: CHCHD1
Go to UniProtKB:  F1SU49
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN MS38, MRPS38
An
72N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN MS39, MRPS39
Ao
530Sus scrofaMutation(s): 0 
Gene Names: PTCD3
Find proteins for K7GKS8 (Sus scrofa)
Go to Gene View: PTCD3
Go to UniProtKB:  K7GKS8
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
28S RIBOSOMAL PROTEIN S18B, MITOCHONDRIAL
Ap
188Sus scrofaMutation(s): 0 
Gene Names: MRPS18B
Find proteins for Q767K8 (Sus scrofa)
Go to Gene View: MRPS18B
Go to UniProtKB:  Q767K8
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
UNASSIGNED HELICES
As
16N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
UNASSIGNED HELICES
Az
17N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BL27M, MRPL27
B0
148Sus scrofaMutation(s): 0 
Gene Names: MRPL27
Find proteins for F1RT79 (Sus scrofa)
Go to Gene View: MRPL27
Go to UniProtKB:  F1RT79
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BL28M, MRPL28
B1
256Sus scrofaMutation(s): 0 
Gene Names: MRPL18
Find proteins for A0A0R4J8D5 (Sus scrofa)
Go to Gene View: MRPL18
Go to UniProtKB:  A0A0R4J8D5
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL29M, MRPL47
B2
252N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL30M, MRPL30
B3
161Sus scrofaMutation(s): 0 
Gene Names: MRPL30
Find proteins for F1STE5 (Sus scrofa)
Go to Gene View: MRPL30
Go to UniProtKB:  F1STE5
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BL31M, MRPL55
B4
126N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BL32M, MRPL32
B5
188Sus scrofaMutation(s): 0 
Gene Names: MRPL32
Find proteins for I3LTC4 (Sus scrofa)
Go to Gene View: MRPL32
Go to UniProtKB:  I3LTC4
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BL33M, MRPL33
B6
65N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BL34M, MRPL34
B7
95Sus scrofa domesticusMutation(s): 0 
Gene Names: MRPL34
Find proteins for W5IDC1 (Sus scrofa domesticus)
Go to Gene View: MRPL34
Go to UniProtKB:  W5IDC1
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BL35M, MRPL35
B8
188Sus scrofaMutation(s): 0 
Gene Names: MRPL35
Find proteins for F1SVC5 (Sus scrofa)
Go to Gene View: MRPL35
Go to UniProtKB:  F1SVC5
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BL36M, MRPL36
B9
100N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL2M, MRPL2
BD
306Sus scrofaMutation(s): 0 
Gene Names: MRPL2
Find proteins for F1RRN2 (Sus scrofa)
Go to Gene View: MRPL2
Go to UniProtKB:  F1RRN2
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL3M, MRPL3
BE
348N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL4M, MRPL4
BF
294Sus scrofaMutation(s): 0 
Gene Names: MRPL4
Find proteins for F1S3J8 (Sus scrofa)
Go to Gene View: MRPL4
Go to UniProtKB:  F1S3J8
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BL9M, MRPL9
BI
268Sus scrofaMutation(s): 0 
Gene Names: MRPL9
Find proteins for I3LR45 (Sus scrofa)
Go to Gene View: MRPL9
Go to UniProtKB:  I3LR45
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL10M, MRPL10
BJ
262Sus scrofaMutation(s): 0 
Gene Names: MRPL10
Find proteins for F1RWJ0 (Sus scrofa)
Go to Gene View: MRPL10
Go to UniProtKB:  F1RWJ0
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL11M, MRPL11
BK
192Sus scrofaMutation(s): 0 
Gene Names: MRPL11
Find proteins for F1RU54 (Sus scrofa)
Go to Gene View: MRPL11
Go to UniProtKB:  F1RU54
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL13M, MRPL13
BN
178N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL14M, MRPL14
BO
145Sus scrofaMutation(s): 0 
Gene Names: MRPL14
Find proteins for F1RQV7 (Sus scrofa)
Go to Gene View: MRPL14
Go to UniProtKB:  F1RQV7
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL15M, MRPL15
BP
296Sus scrofaMutation(s): 0 
Gene Names: MRPL15
Find proteins for F1RSH0 (Sus scrofa)
Go to Gene View: MRPL15
Go to UniProtKB:  F1RSH0
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL16M, MRPL16
BQ
251Sus scrofaMutation(s): 0 
Gene Names: MRPL16
Find proteins for F1RI89 (Sus scrofa)
Go to Gene View: MRPL16
Go to UniProtKB:  F1RI89
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BL17M, MRPL17
BR
169Sus scrofaMutation(s): 0 
Gene Names: MRPL17
Find proteins for F1RMQ4 (Sus scrofa)
Go to Gene View: MRPL17
Go to UniProtKB:  F1RMQ4
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL18M, MRPL18
BS
180Sus scrofaMutation(s): 0 
Gene Names: MRPL18
Find proteins for A0A0R4J8D5 (Sus scrofa)
Go to Gene View: MRPL18
Go to UniProtKB:  A0A0R4J8D5
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BL19M, MRPL19
BT
292Sus scrofaMutation(s): 0 
Gene Names: MRPL19
Find proteins for I3LNJ0 (Sus scrofa)
Go to Gene View: MRPL19
Go to UniProtKB:  I3LNJ0
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BL20M, MRPL20
BU
149N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN BL21M, MRPL21
BV
209Sus scrofaMutation(s): 0 
Gene Names: MRPL21
Find proteins for F1RY70 (Sus scrofa)
Go to Gene View: MRPL21
Go to UniProtKB:  F1RY70
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL22M, MRPL22
BW
210N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL23M, MRPL23
BX
150N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN UL24M, MRPL24
BY
216Sus scrofaMutation(s): 0 
Gene Names: MRPL24
Find proteins for F1RHJ1 (Sus scrofa)
Go to Gene View: MRPL24
Go to UniProtKB:  F1RHJ1
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML37, MRPL37
Ba
423N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 67
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML38, MRPL38
Bb
380Sus scrofaMutation(s): 0 
Gene Names: MRPL38
Find proteins for F1RW03 (Sus scrofa)
Go to Gene View: MRPL38
Go to UniProtKB:  F1RW03
Entity ID: 68
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML39, MRPL39
Bc
334N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 69
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML40, MRPL40
Bd
206N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 70
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML41, MRPL41
Be
135N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 71
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML42, MRPL42
Bf
142N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 72
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML43, MRPL43
Bg
159Sus scrofaMutation(s): 0 
Gene Names: MRPL43
Find proteins for F1S8U4 (Sus scrofa)
Go to Gene View: MRPL43
Go to UniProtKB:  F1S8U4
Entity ID: 73
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML44, MRPL44
Bh
332Sus scrofaMutation(s): 0 
Gene Names: MRPL44
Find proteins for F1SR64 (Sus scrofa)
Go to Gene View: MRPL44
Go to UniProtKB:  F1SR64
Entity ID: 74
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML45, MRPL45
Bi
312N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 75
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML46, MRPL46
Bj
279Sus scrofaMutation(s): 0 
Gene Names: MRPL46
Find proteins for F1SRT0 (Sus scrofa)
Go to Gene View: MRPL46
Go to UniProtKB:  F1SRT0
Entity ID: 76
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML48, MRPL48
Bk
212N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 77
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML49, MRPL49
Bl
166N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 78
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML50, MRPL50
Bm
159Sus scrofaMutation(s): 0 
Gene Names: MRPL50
Find proteins for I3L9H6 (Sus scrofa)
Go to Gene View: MRPL50
Go to UniProtKB:  I3L9H6
Entity ID: 79
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML51, MRPL51
Bn
128N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 80
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML52, MRPL52
Bo
124Sus scrofaMutation(s): 0 
Gene Names: MRPL52
Find proteins for F1S9B7 (Sus scrofa)
Go to Gene View: MRPL52
Go to UniProtKB:  F1S9B7
Entity ID: 81
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML53, MRPL53
Bp
112N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 82
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML54, MRPL54
Bq
138N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 83
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML63, MRPL57
Bt
102N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 84
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML62, MRPL58
Bu
205Sus scrofa domesticusMutation(s): 0 
Find proteins for W5IDC0 (Sus scrofa domesticus)
Go to UniProtKB:  W5IDC0
Entity ID: 85
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML64, MRPL59
Bv
222N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 86
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML65, MRPS30
Bw
433N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 87
MoleculeChainsSequence LengthOrganismDetails
MITORIBOSOMAL PROTEIN ML66, MRPS18A
Bx
196Sus scrofaMutation(s): 0 
Gene Names: MRPS18A
Find proteins for F1RRH6 (Sus scrofa)
Go to Gene View: MRPS18A
Go to UniProtKB:  F1RRH6
Entity ID: 88
MoleculeChainsSequence LengthOrganismDetails
UNASSIGNED SECONDARY STRUCTURE ELEMENTS
Bz
94N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 1
MoleculeChainsLengthOrganism
MITORIBOSOMAL 12S Ribosomal RNAAA962Sus scrofa
Entity ID: 17
MoleculeChainsLengthOrganism
P-SITE AND A-SITE TRNAAV,AY69Sus scrofa
Entity ID: 18
MoleculeChainsLengthOrganism
MRNAAX13Sus scrofa
Entity ID: 46
MoleculeChainsLengthOrganism
MITORIBOSOMAL 16S Ribosomal RNABA1570Sus scrofa
Entity ID: 47
MoleculeChainsLengthOrganism
MITORIBOSOMAL CP TRNABB51Sus scrofa
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download SDF File 
Download CCD File 
Ag
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
ZN
Query on ZN

Download SDF File 
Download CCD File 
Ac, Ap, AR, B5, B9, Bx
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
AA, Ag, B0, B2, BA, BD, BE, BP, BR, BX
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  3 Unique
IDChainsTypeFormula2D DiagramParent
Y5P
Query on Y5P
AV, AX, AY, BB
RNA LINKINGC9 H15 N2 O7 P

--

P5P
Query on P5P
AV, AY, BB
RNA LINKINGC10 H13 N4 O7 PA
UNK
Query on UNK
Aa, Ae, Ag, AI, Aj, Ao, As, Az, Bf, BT, Bu, Bv, Bz
L-PEPTIDE LINKINGC4 H9 N O2

--

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-04-22
    Type: Initial release
  • Version 1.1: 2015-05-06
    Type: Database references, Other, Structure summary
  • Version 1.2: 2016-05-25
    Type: Source and taxonomy
  • Version 2.0: 2017-08-02
    Type: Advisory, Atomic model, Data collection, Derived calculations
  • Version 2.1: 2018-04-04
    Type: Data collection, Database references, Source and taxonomy, Structure summary