5AJ4 | pdb_00005aj4

Structure of the 55S mammalian mitoribosome.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
NB [auth BY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082519 3000334 SCOP2B (2022-06-29)
KB [auth BV]SCOP2B Superfamilyl21p-like 8082451 3002005 SCOP2B (2022-06-29)
IB [auth BT]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8089132 3000334 SCOP2B (2022-06-29)
FB [auth BQ]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8076055 3000884 SCOP2B (2022-06-29)
DB [auth BO]SCOP2B Superfamily50S Ribosomal protein L14-like 8072068 3000433 SCOP2B (2022-06-29)
ZA [auth BI]SCOP2B SuperfamilyL9 N-domain-like 8070579 3000338 SCOP2B (2022-06-29)
AA [auth Ah]SCOP2 FamilyMitochondrial 28S ribosomal protein S31-like 8051223 4007256 SCOP2 (2022-06-29)
AA [auth Ah]SCOP2 SuperfamilyMitochondrial 28S ribosomal protein S31-like 8090912 3002471 SCOP2 (2022-06-29)
B [auth AB]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063848 3001397 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth AK]Ribosomal_S11e5aj4AK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
JC [auth Bx]Ribosomal_S18e5aj4Bx1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
IC [auth Bw]PDCD9e5aj4Bw1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDCD9ECOD (1.6)
HC [auth Bv]CR6_interacte5aj4Bv1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L25 (From Topology)H: Mitochondrial 54S ribosomal protein L25 (From Topology)T: Mitochondrial 54S ribosomal protein L25F: CR6_interactECOD (1.6)
GC [auth Bu]RF-1_Ne5aj4Bu1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: RF-1_NECOD (1.6)
FC [auth Bt]MRP-63e5aj4Bt1 A: extended segmentsX: Mitoribosomal protein mL63 (From Topology)H: Mitoribosomal protein mL63 (From Topology)T: Mitoribosomal protein mL63F: MRP-63ECOD (1.6)
DC [auth Bp]MRP_L53e5aj4Bp1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: MRP_L53ECOD (1.6)
CC [auth Bo]EUF08791e5aj4Bo1 A: extended segmentsX: Mitoribosomal protein mL52 (From Topology)H: Mitoribosomal protein mL52 (From Topology)T: Mitoribosomal protein mL52F: EUF08791ECOD (1.6)
H [auth AJ]Ribosomal_S10_2e5aj4AJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_2ECOD (1.6)
BC [auth Bn]MRP-L51e5aj4Bn1 A: alpha bundlesX: Long alpha-hairpinH: Mitoribosomal protein mL51 (From Topology)T: Mitoribosomal protein mL51F: MRP-L51ECOD (1.6)
AC [auth Bm]Ribosomal_L50e5aj4Bm1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: Ribosomal_L50ECOD (1.6)
ZB [auth Bl]Img2e5aj4Bl1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: Img2ECOD (1.6)
YB [auth Bk]Ribosomal_S10_2e5aj4Bk1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_2ECOD (1.6)
XB [auth Bj]MRP-L46e5aj4Bj1 A: a+b two layersX: beta-GraspH: Nudix (From Topology)T: NudixF: MRP-L46ECOD (1.6)
WB [auth Bi]Tim44e5aj4Bi1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: Tim44ECOD (1.6)
VB [auth Bh]Ribonucleas_3_3e5aj4Bh2 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: Ribonucleas_3_3ECOD (1.6)
VB [auth Bh]dsrme5aj4Bh1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: dsrmECOD (1.6)
UB [auth Bg]L51_S25_CI-B8e5aj4Bg1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: L51_S25_CI-B8ECOD (1.6)
TB [auth Bf]MRP-S32e5aj4Bf1 A: extended segmentsX: Mitoribosomal protein mL42 (From Topology)H: Mitoribosomal protein mL42 (From Topology)T: Mitoribosomal protein mL42F: MRP-S32ECOD (1.6)
SB [auth Be]MRP-L27e5aj4Be1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L27 (From Topology)H: Mitochondrial 54S ribosomal protein L27 (From Topology)T: Mitochondrial 54S ribosomal protein L27F: MRP-L27ECOD (1.6)
G [auth AI]Ribosomal_S9e5aj4AI1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
RB [auth Bd]MRP-L28e5aj4Bd1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L28 (From Topology)H: Mitochondrial 54S ribosomal protein L28 (From Topology)T: Mitochondrial 54S ribosomal protein L28F: MRP-L28ECOD (1.6)
QB [auth Bc]TGSe5aj4Bc2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: TGSECOD (1.6)
QB [auth Bc]tRNA_SADe5aj4Bc1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: ThrRS/AlaRS editing domainF: tRNA_SADECOD (1.6)
PB [auth Bb]PBPe5aj4Bb1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: PEBP-likeF: PBPECOD (1.6)
OB [auth Ba]PDCD9e5aj4Ba1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDCD9ECOD (1.6)
NB [auth BY]ribosomal_L24_1e5aj4BY1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
MB [auth BX]Ribosomal_L23_2e5aj4BX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
LB [auth BW]Ribosomal_L22e5aj4BW1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
KB [auth BV]Ribosomal_L21pe5aj4BV1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
JB [auth BU]Ribosomal_L20e5aj4BU1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
IB [auth BT]Ribosomal_L19e5aj4BT1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
F [auth AG]Ribosomal_S7e5aj4AG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7ECOD (1.6)
HB [auth BS]Ribosomal_L18pe5aj4BS1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
GB [auth BR]Ribosomal_L17e5aj4BR1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17ECOD (1.6)
FB [auth BQ]Ribosomal_L16e5aj4BQ1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
EB [auth BP]Ribosomal_L27Ae5aj4BP1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
DB [auth BO]Ribosomal_L14e5aj4BO1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
CB [auth BN]Ribosomal_L13e5aj4BN1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
BB [auth BK]Ribosomal_L11e5aj4BK2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
BB [auth BK]Ribosomal_L11_Ne5aj4BK1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
AB [auth BJ]Ribosomal_L10e5aj4BJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
ZA [auth BI]Ribosomal_L9_N_1e5aj4BI1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_N_1ECOD (1.6)
YA [auth BF]Ribosomal_L4e5aj4BF1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
E [auth AF]Ribosomal_S6_1e5aj4AF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6_1ECOD (1.6)
XA [auth BE]Ribosomal_L3e5aj4BE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
WA [auth BD]Ribosomal_L2e5aj4BD1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2ECOD (1.6)
WA [auth BD]Ribosomal_L2_Ce5aj4BD2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
TA [auth B9]Ribosomal_L36e5aj4B91 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
SA [auth B8]Ribosomal_L35pe5aj4B81 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
RA [auth B7]Ribosomal_L34e5aj4B71 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
QA [auth B6]Ribosomal_L33e5aj4B61 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
PA [auth B5]KOG4080e5aj4B51 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: KOG4080ECOD (1.6)
OA [auth B4]Mitoc_L55e5aj4B41 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Mitoc_L55ECOD (1.6)
D [auth AE]Ribosomal_S5_Ce5aj4AE3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
D [auth AE]Ribosomal_S5_1e5aj4AE2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_1ECOD (1.6)
D [auth AE]KOG2646e5aj4AE1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: KOG2646ECOD (1.6)
NA [auth B3]Ribosomal_L30e5aj4B31 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
MA [auth B2]MRP-L47e5aj4B21 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: MRP-L47ECOD (1.6)
LA [auth B1]Ribosomal_L28_1e5aj4B11 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Mitoribosomal protein bL28mF: Ribosomal_L28_1ECOD (1.6)
KA [auth B0]Ribosomal_L27e5aj4B01 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
HA [auth Ap]Ribosomal_S18e5aj4Ap1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
FA [auth An]DUF1713e5aj4An1 A: extended segmentsX: Mitoribosomal protein mS38 (From Topology)H: Mitoribosomal protein mS38 (From Topology)T: Mitoribosomal protein mS38F: DUF1713ECOD (1.6)
EA [auth Am]KOG4695e5aj4Am1 A: few secondary structure elementsX: p8-MTCP1-related (From Topology)H: p8-MTCP1-related (From Topology)T: p8-MTCP1-relatedF: KOG4695ECOD (1.6)
C [auth AC]MRP-S24e5aj4AC1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: MRP-S24ECOD (1.6)
DA [auth Ak]UNK_F_TYPEe5aj4Ak1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: UNK_F_TYPEECOD (1.6)
CA [auth Aj]MRP-S34e5aj4Aj1 A: beta barrelsX: SH3H: Mitoribosomal protein mS34 (From Topology)T: Mitoribosomal protein mS34F: MRP-S34ECOD (1.6)
BA [auth Ai]MRP-S33e5aj4Ai1 A: extended segmentsX: Mitoribosomal protein mS33 (From Topology)H: Mitoribosomal protein mS33 (From Topology)T: Mitoribosomal protein mS33F: MRP-S33ECOD (1.6)
AA [auth Ah]MRP-S31e5aj4Ah1 A: extended segmentsX: Mitoribosomal protein mS31 (From Topology)H: Mitoribosomal protein mS31 (From Topology)T: Mitoribosomal protein mS31F: MRP-S31ECOD (1.6)
Z [auth Ag]DAP3_Ce5aj4Ag1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: DAP3_CECOD (1.6)
Z [auth Ag]DAP3_Ne5aj4Ag2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DAP3_NECOD (1.6)
Y [auth Af]MRP-S35e5aj4Af1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: MRP-S35ECOD (1.6)
W [auth Ad]MRP-S26e5aj4Ad1 A: extended segmentsX: Mitoribosomal protein mS26 (From Topology)H: Mitoribosomal protein mS26 (From Topology)T: Mitoribosomal protein mS26F: MRP-S26ECOD (1.6)
V [auth Ac]L51_S25_CI-B8e5aj4Ac1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: L51_S25_CI-B8ECOD (1.6)
U [auth Ab]MRP-S23e5aj4Ab1 A: alpha arraysX: RuvA-CH: Mitoribosomal protein mS23 (From Topology)T: Mitoribosomal protein mS23F: MRP-S23ECOD (1.6)
B [auth AB]Ribosomal_S2_1e5aj4AB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_1ECOD (1.6)
T [auth Aa]MRP-S22e5aj4Aa1 A: a+b complex topologyX: Mitoribosomal protein mS22 (From Topology)H: Mitoribosomal protein mS22 (From Topology)T: Mitoribosomal protein mS22F: MRP-S22ECOD (1.6)
P [auth AU]Ribosomal_S21_2e5aj4AU1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21_2ECOD (1.6)
O [auth AR]Ribosomal_S18e5aj4AR1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
N [auth AQ]Ribosomal_S17_1e5aj4AQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
M [auth AP]Ribosomal_S16e5aj4AP1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
L [auth AO]Ribosomal_S15_1e5aj4AO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
K [auth AN]Ribosomal_S14_1e5aj4AN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
J [auth AL]Ribosom_S12_S23e5aj4AL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth AK]PF10213Mitochondrial ribosomal subunit protein (MRP-S28)Mitochondrial ribosomal subunit protein- Family
NB [auth BY]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
NB [auth BY]PF00467KOW motif (KOW)KOW motif- Family
MB [auth BX]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
KB [auth BV]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
JB [auth BU]PF00472RF-1 domain (RF-1)RF-1 domainThis domain is found in peptide chain release factors such as RF-1 (Swiss:P07011) and RF-2 (Swiss:P07012), and a number of smaller proteins of unknown function such as Swiss:P40711. This domain contains the peptidyl-tRNA hydrolase activity. The domai ...This domain is found in peptide chain release factors such as RF-1 (Swiss:P07011) and RF-2 (Swiss:P07012), and a number of smaller proteins of unknown function such as Swiss:P40711. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis.
Domain
IB [auth BT]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
HB [auth BS]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
GB [auth BR]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
FB [auth BQ]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
DB [auth BO]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
DB [auth BO]PF18699Mitoribosomal protein mL52 (MRPL52)Mitoribosomal protein mL52- Family
BB [auth BK]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
AB [auth BJ]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
AB [auth BJ]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
ZA [auth BI]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
WA [auth BD]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
RA [auth B7]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
PA [auth B5]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
D [auth AE]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
D [auth AE]PF21251Small ribosomal subunit protein uS5m, N-terminal (Ribosomal_uS5m_N)Small ribosomal subunit protein uS5m, N-terminalThis entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the m ...This entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the mRNA channel entrance [2].
Domain
D [auth AE]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
NA [auth B3]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
C [auth AC]PF14955Mitochondrial ribosome subunit S24 (MRP-S24)Mitochondrial ribosome subunit S24- Family
B [auth AB]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
N [auth AQ]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
M [auth AP]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
L [auth AO]PF22330Small ribosomal subunit protein mS39, PPR (Rib_mS39_PPR)Small ribosomal subunit protein mS39, PPR- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth AK]MITORIBOSOMAL PROTEIN US11M, MRPS11---
KC [auth Bz]UNASSIGNED SECONDARY STRUCTURE ELEMENTS---
JC [auth Bx]MITORIBOSOMAL PROTEIN ML66, MRPS18A
IC [auth Bw]MITORIBOSOMAL PROTEIN ML65, MRPS30---
HC [auth Bv]MITORIBOSOMAL PROTEIN ML64, MRPL59---
GC [auth Bu]MITORIBOSOMAL PROTEIN ML62, MRPL58
FC [auth Bt]MITORIBOSOMAL PROTEIN ML63, MRPL57---
EC [auth Bq]MITORIBOSOMAL PROTEIN ML54, MRPL54---
DC [auth Bp]MITORIBOSOMAL PROTEIN ML53, MRPL53- - -
CC [auth Bo]MITORIBOSOMAL PROTEIN ML52, MRPL52
H [auth AJ]MITORIBOSOMAL PROTEIN US10M, MRPS10---
BC [auth Bn]MITORIBOSOMAL PROTEIN ML51, MRPL51---
AC [auth Bm]MITORIBOSOMAL PROTEIN ML50, MRPL50- -
ZB [auth Bl]MITORIBOSOMAL PROTEIN ML49, MRPL49---
YB [auth Bk]MITORIBOSOMAL PROTEIN ML48, MRPL48---
XB [auth Bj]MITORIBOSOMAL PROTEIN ML46, MRPL46 -
WB [auth Bi]MITORIBOSOMAL PROTEIN ML45, MRPL45---
VB [auth Bh]MITORIBOSOMAL PROTEIN ML44, MRPL44
UB [auth Bg]MITORIBOSOMAL PROTEIN ML43, MRPL43
TB [auth Bf]MITORIBOSOMAL PROTEIN ML42, MRPL42---
SB [auth Be]MITORIBOSOMAL PROTEIN ML41, MRPL41---
G [auth AI]MITORIBOSOMAL PROTEIN US9M, MRPS9---
RB [auth Bd]MITORIBOSOMAL PROTEIN ML40, MRPL40---
QB [auth Bc]MITORIBOSOMAL PROTEIN ML39, MRPL39---
PB [auth Bb]MITORIBOSOMAL PROTEIN ML38, MRPL38- -
OB [auth Ba]MITORIBOSOMAL PROTEIN ML37, MRPL37---
NB [auth BY]MITORIBOSOMAL PROTEIN UL24M, MRPL24
MB [auth BX]MITORIBOSOMAL PROTEIN UL23M, MRPL23---
LB [auth BW]MITORIBOSOMAL PROTEIN UL22M, MRPL22---
KB [auth BV]MITORIBOSOMAL PROTEIN BL21M, MRPL21
JB [auth BU]MITORIBOSOMAL PROTEIN BL20M, MRPL20---
IB [auth BT]MITORIBOSOMAL PROTEIN BL19M, MRPL19
F [auth AG]MITORIBOSOMAL PROTEIN US7M, MRPS7---
HB [auth BS]MITORIBOSOMAL PROTEIN UL18M, MRPL18
GB [auth BR]MITORIBOSOMAL PROTEIN BL17M, MRPL17
FB [auth BQ]MITORIBOSOMAL PROTEIN UL16M, MRPL16
EB [auth BP]MITORIBOSOMAL PROTEIN UL15M, MRPL15---
DB [auth BO]MITORIBOSOMAL PROTEIN UL14M, MRPL14
CB [auth BN]MITORIBOSOMAL PROTEIN UL13M, MRPL13---
BB [auth BK]MITORIBOSOMAL PROTEIN UL11M, MRPL11
AB [auth BJ]MITORIBOSOMAL PROTEIN UL10M, MRPL10- -
ZA [auth BI]MITORIBOSOMAL PROTEIN BL9M, MRPL9
YA [auth BF]MITORIBOSOMAL PROTEIN UL4M, MRPL4---
E [auth AF]MITORIBOSOMAL PROTEIN BS6M, MRPS6---
XA [auth BE]MITORIBOSOMAL PROTEIN UL3M, MRPL3---
WA [auth BD]MITORIBOSOMAL PROTEIN UL2M, MRPL2
VA [auth BB]MITORIBOSOMAL CP TRNA---
UA [auth BA]MITORIBOSOMAL 16S Ribosomal RNA---
TA [auth B9]MITORIBOSOMAL PROTEIN BL36M, MRPL36---
SA [auth B8]MITORIBOSOMAL PROTEIN BL35M, MRPL35- -
RA [auth B7]MITORIBOSOMAL PROTEIN BL34M, MRPL34
QA [auth B6]MITORIBOSOMAL PROTEIN BL33M, MRPL33---
PA [auth B5]MITORIBOSOMAL PROTEIN BL32M, MRPL32
OA [auth B4]MITORIBOSOMAL PROTEIN BL31M, MRPL55---
D [auth AE]MITORIBOSOMAL PROTEIN US5M, MRPS5
NA [auth B3]MITORIBOSOMAL PROTEIN UL30M, MRPL30
MA [auth B2]MITORIBOSOMAL PROTEIN UL29M, MRPL47---
LA [auth B1]MITORIBOSOMAL PROTEIN BL28M, MRPL28
KA [auth B0]MITORIBOSOMAL PROTEIN BL27M, MRPL27
JA [auth Az]UNASSIGNED HELICES---
IA [auth As]UNASSIGNED HELICES---
HA [auth Ap]28S RIBOSOMAL PROTEIN S18B, MITOCHONDRIAL
GA [auth Ao]MITORIBOSOMAL PROTEIN MS39, MRPS39
FA [auth An]MITORIBOSOMAL PROTEIN MS38, MRPS38---
EA [auth Am]MITORIBOSOMAL PROTEIN MS37, MRPS37-
C [auth AC]MITORIBOSOMAL PROTEIN US3M, MRPS24- -
DA [auth Ak]MITORIBOSOMAL PROTEIN MS35, MRPS35
CA [auth Aj]MITORIBOSOMAL PROTEIN MS34, MRPS34---
BA [auth Ai]MITORIBOSOMAL PROTEIN MS33, MRPS33- -
AA [auth Ah]MITORIBOSOMAL PROTEIN MS31, MRPS31 -
Z [auth Ag]MITORIBOSOMAL PROTEIN MS29, MRPS29---
Y [auth Af]MITORIBOSOMAL PROTEIN MS28, MRPS28---
X [auth Ae]MITORIBOSOMAL PROTEIN MS27, MRPS27---
W [auth Ad]MITORIBOSOMAL PROTEIN MS26, MRPS26- -
V [auth Ac]MITORIBOSOMAL PROTEIN MS25, MRPS25---
U [auth Ab]MITORIBOSOMAL PROTEIN MS23, MRPS23---
B [auth AB]MITORIBOSOMAL PROTEIN US2M, MRPS2
T [auth Aa]MITORIBOSOMAL PROTEIN MS22, MRPS22---
R [auth AX]MRNA---
Q [auth AV],
S [auth AY]
P-SITE AND A-SITE TRNA---
P [auth AU]MITORIBOSOMAL PROTEIN BS21M, MRPS21---
O [auth AR]MITORIBOSOMAL PROTEIN BS18M, MRPS18C---
N [auth AQ]MITORIBOSOMAL PROTEIN US17M, MRPS17
M [auth AP]MITORIBOSOMAL PROTEIN BS16M, MRPS16---
L [auth AO]MITORIBOSOMAL PROTEIN US15M, MRPS15---
K [auth AN]MITORIBOSOMAL PROTEIN US14M, MRPS14---
J [auth AL]MITORIBOSOMAL PROTEIN US12M, MRPS12---
A [auth AA]MITORIBOSOMAL 12S Ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
JC [auth Bx]IPR001648Small ribosomal subunit protein bS18Family
JC [auth Bx]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
GC [auth Bu]IPR000352Peptide chain release factor class IDomain
GC [auth Bu]IPR052104Mitochondrial Release Factor mL62Family
DC [auth Bp]IPR026700Coiled-coil domain-containing protein 142Family
DC [auth Bp]IPR056901CC142, N-terminalDomain
DC [auth Bp]IPR055350Coiled-coil protein 142, C-terminalDomain
CC [auth Bo]IPR034596Large ribosomal subunit protein mL52Family
AC [auth Bm]IPR018305Large ribosomal subunit protein mL50Family
XB [auth Bj]IPR015797NUDIX hydrolase-like domain superfamilyHomologous Superfamily
XB [auth Bj]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
XB [auth Bj]IPR040008Large ribosomal subunit protein mL46Family
XB [auth Bj]IPR033650Large ribosomal subunit protein mL46, NUDIX domainDomain
VB [auth Bh]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
VB [auth Bh]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
VB [auth Bh]IPR055189Large ribosomal subunit protein mL44, endonuclease domainDomain
VB [auth Bh]IPR014720Double-stranded RNA-binding domainDomain
UB [auth Bg]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
UB [auth Bg]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
UB [auth Bg]IPR039927Large ribosomal subunit protein mL43Family
PB [auth Bb]IPR036610PEBP-like superfamilyHomologous Superfamily
PB [auth Bb]IPR008914Phosphatidylethanolamine-binding proteinFamily
PB [auth Bb]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
NB [auth BY]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
NB [auth BY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
NB [auth BY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NB [auth BY]IPR003256Large ribosomal subunit protein uL24Family
NB [auth BY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
NB [auth BY]IPR005824KOWDomain
NB [auth BY]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
KB [auth BV]IPR028909Large ribosomal subunit protein bL21-likeFamily
KB [auth BV]IPR001787Large ribosomal subunit protein bL21Family
KB [auth BV]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
IB [auth BT]IPR001857Large ribosomal subunit protein bL19Family
IB [auth BT]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
IB [auth BT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HB [auth BS]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
HB [auth BS]IPR057268Large ribosomal subunit protein uL18Family
HB [auth BS]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
GB [auth BR]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
GB [auth BR]IPR000456Large ribosomal subunit protein bL17Family
FB [auth BQ]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
FB [auth BQ]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
FB [auth BQ]IPR016180Large ribosomal subunit protein uL16 domainDomain
FB [auth BQ]IPR047873Large ribosomal subunit protein uL16Family
DB [auth BO]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
DB [auth BO]IPR000218Large ribosomal subunit protein uL14Family
BB [auth BK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
BB [auth BK]IPR000911Ribosomal protein uL11Family
BB [auth BK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
BB [auth BK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
AB [auth BJ]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
AB [auth BJ]IPR001790Large ribosomal subunit protein uL10Family
AB [auth BJ]IPR047865Large ribosomal subunit protein uL10, bacteria/organellaFamily
ZA [auth BI]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
ZA [auth BI]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
ZA [auth BI]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
ZA [auth BI]IPR054302Large ribosomal subunit protein bL9m, C-terminal domainDomain
ZA [auth BI]IPR056864Large ribosomal subunit protein bL9m, N-terminal domainDomain
ZA [auth BI]IPR000244Large ribosomal subunit protein bL9Family
WA [auth BD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
WA [auth BD]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
WA [auth BD]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
WA [auth BD]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
WA [auth BD]IPR002171Large ribosomal subunit protein uL2Family
SA [auth B8]IPR019338Large ribosomal subunit protein bL35mFamily
RA [auth B7]IPR000271Large ribosomal subunit protein bL34Family
PA [auth B5]IPR002677Large ribosomal subunit protein bL32Family
PA [auth B5]IPR051991Mitochondrial ribosomal protein bL32Family
PA [auth B5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
D [auth AE]IPR000851Small ribosomal subunit protein uS5Family
D [auth AE]IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
D [auth AE]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
D [auth AE]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
D [auth AE]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
D [auth AE]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
D [auth AE]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
NA [auth B3]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
NA [auth B3]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
NA [auth B3]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
LA [auth B1]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
LA [auth B1]IPR057268Large ribosomal subunit protein uL18Family
LA [auth B1]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
KA [auth B0]IPR001684Large ribosomal subunit protein bL27Family
HA [auth Ap]IPR040054Small ribosomal subunit protein mS40Family
HA [auth Ap]IPR001648Small ribosomal subunit protein bS18Family
HA [auth Ap]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
GA [auth Ao]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
GA [auth Ao]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
GA [auth Ao]IPR055063Small ribosomal subunit protein mS39, PPRRepeat
GA [auth Ao]IPR002885Pentatricopeptide repeatRepeat
EA [auth Am]IPR010625CHCHDomain
EA [auth Am]IPR009069Cysteine alpha-hairpin motif superfamilyHomologous Superfamily
EA [auth Am]IPR033620Small ribosomal subunit protein mS37, metazoanFamily
C [auth AC]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
DA [auth Ak]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
DA [auth Ak]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
BA [auth Ai]IPR013219Small ribosomal subunit protein mS33Family
AA [auth Ah]IPR026299Mitochondrial 28S ribosomal protein S31Family
W [auth Ad]IPR026140Small ribosomal subunit protein mS26Family
B [auth AB]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth AB]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth AB]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth AB]IPR001865Small ribosomal subunit protein uS2Family
N [auth AQ]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
N [auth AQ]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
N [auth AQ]IPR000266Small ribosomal subunit protein uS17Family