5AEK

Crystal structure of the human SENP2 C548S in complex with the human SUMO1 K48M F66W


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.326 
  • R-Value Work: 0.257 
  • R-Value Observed: 0.259 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Stepping Back and Forward on Sumo Folding Evolution

Grana-Montes, R.Gallego, P.Espargaro, A.Castillo, V.Torrent, J.Lange, R.Reverter, D.Papaleo, E.Lindorff-Larsend, K.Ventura, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
SENTRIN-SPECIFIC PROTEASE 2
A, C, E, G, I, K, M, O, Q, S, U, W
A, C, E, G, I, K, M, O, Q, S, U, W
224Homo sapiensMutation(s): 1 
Gene Names: SENP2KIAA1331
EC: 3.4.22.68 (PDB Primary Data), 3.4.22 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q9HC62 (Homo sapiens)
Explore Q9HC62 
Go to UniProtKB:  Q9HC62
PHAROS:  Q9HC62
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9HC62
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
SMALL UBIQUITIN-RELATED MODIFIER 1
B, D, F, H, J, L, N, P, R, T, V, X
B, D, F, H, J, L, N, P, R, T, V, X
78Homo sapiensMutation(s): 2 
Gene Names: SUMO1SMT3CSMT3H3UBL1OK/SW-cl.43
UniProt & NIH Common Fund Data Resources
Find proteins for P63165 (Homo sapiens)
Explore P63165 
Go to UniProtKB:  P63165
PHAROS:  P63165
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP63165
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.326 
  • R-Value Work: 0.257 
  • R-Value Observed: 0.259 
  • Space Group: P 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 113.721α = 90
b = 119.319β = 89.67
c = 199.84γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XPSdata reduction
CCP4Idata scaling
MOLREPphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-01-20
    Type: Initial release
  • Version 1.1: 2019-05-22
    Changes: Data collection, Experimental preparation, Other