5AEK

Crystal structure of the human SENP2 C548S in complex with the human SUMO1 K48M F66W


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.326 
  • R-Value Work: 0.257 
  • R-Value Observed: 0.259 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Stepping Back and Forward on Sumo Folding Evolution

Grana-Montes, R.Gallego, P.Espargaro, A.Castillo, V.Torrent, J.Lange, R.Reverter, D.Papaleo, E.Lindorff-Larsend, K.Ventura, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
SENTRIN-SPECIFIC PROTEASE 2ACEGIKMOQSUW224Homo sapiensMutation(s): 1 
Gene Names: SENP2KIAA1331
EC: 3.4.22.68 (PDB Primary Data), 3.4.22 (UniProt)
Find proteins for Q9HC62 (Homo sapiens)
Explore Q9HC62 
Go to UniProtKB:  Q9HC62
NIH Common Fund Data Resources
PHAROS  Q9HC62
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
SMALL UBIQUITIN-RELATED MODIFIER 1BDFHJLNPRTVX78Homo sapiensMutation(s): 2 
Gene Names: SUMO1SMT3CSMT3H3UBL1OK/SW-cl.43
Find proteins for P63165 (Homo sapiens)
Explore P63165 
Go to UniProtKB:  P63165
NIH Common Fund Data Resources
PHAROS  P63165
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.326 
  • R-Value Work: 0.257 
  • R-Value Observed: 0.259 
  • Space Group: P 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 113.721α = 90
b = 119.319β = 89.67
c = 199.84γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XPSdata reduction
CCP4Idata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-01-20
    Type: Initial release
  • Version 1.1: 2019-05-22
    Changes: Data collection, Experimental preparation, Other