Crystal structure of the human SENP2 C548S in complex with the human SUMO1 K48M F66W
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| X | SCOP2B Superfamily | Ubiquitin-like | 8043414 | 3000157 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | Ubiquitin-like | 8043414 | 3000157 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | Ubiquitin-like | 8043414 | 3000157 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | Ubiquitin-like | 8043414 | 3000157 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | Ubiquitin-like | 8043414 | 3000157 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | Ubiquitin-like | 8043414 | 3000157 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Ubiquitin-like | 8043414 | 3000157 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Ubiquitin-like | 8043414 | 3000157 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Ubiquitin-like | 8043414 | 3000157 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Ubiquitin-like | 8043414 | 3000157 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Ubiquitin-like | 8043414 | 3000157 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Ubiquitin-like | 8043414 | 3000157 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | Cysteine proteinases | 8040201 | 3001808 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | Cysteine proteinases | 8040201 | 3001808 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | Cysteine proteinases | 8040201 | 3001808 | SCOP2B (2022-06-29) |
| Q | SCOP2B Superfamily | Cysteine proteinases | 8040201 | 3001808 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | Cysteine proteinases | 8040201 | 3001808 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Cysteine proteinases | 8040201 | 3001808 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Cysteine proteinases | 8040201 | 3001808 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Cysteine proteinases | 8040201 | 3001808 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Cysteine proteinases | 8040201 | 3001808 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Cysteine proteinases | 8040201 | 3001808 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Cysteine proteinases | 8040201 | 3001808 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Cysteine proteinases | 8040201 | 3001808 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| X | Rad60-SLD | e5aekX1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
| V | Rad60-SLD | e5aekV1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
| T | Rad60-SLD | e5aekT1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
| R | Rad60-SLD | e5aekR1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
| P | Rad60-SLD | e5aekP1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
| N | Rad60-SLD | e5aekN1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
| L | Rad60-SLD | e5aekL1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
| J | Rad60-SLD | e5aekJ1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
| H | Rad60-SLD | e5aekH1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
| F | Rad60-SLD | e5aekF1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
| D | Rad60-SLD | e5aekD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
| B | Rad60-SLD | e5aekB1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
| W | Peptidase_C48 | e5aekW1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C48 | ECOD (1.6) |
| U | Peptidase_C48 | e5aekU1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C48 | ECOD (1.6) |
| S | Peptidase_C48 | e5aekS1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C48 | ECOD (1.6) |
| Q | Peptidase_C48 | e5aekQ1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C48 | ECOD (1.6) |
| O | Peptidase_C48 | e5aekO1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C48 | ECOD (1.6) |
| M | Peptidase_C48 | e5aekM1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C48 | ECOD (1.6) |
| K | Peptidase_C48 | e5aekK1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C48 | ECOD (1.6) |
| I | Peptidase_C48 | e5aekI1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C48 | ECOD (1.6) |
| G | Peptidase_C48 | e5aekG1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C48 | ECOD (1.6) |
| E | Peptidase_C48 | e5aekE1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C48 | ECOD (1.6) |
| C | Peptidase_C48 | e5aekC1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C48 | ECOD (1.6) |
| A | Peptidase_C48 | e5aekA1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C48 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF11976 | Ubiquitin-2 like Rad60 SUMO-like (Rad60-SLD) | Ubiquitin-2 like Rad60 SUMO-like | - | Family | |
| PF02902 | Ulp1 protease family, C-terminal catalytic domain (Peptidase_C48) | Ulp1 protease family, C-terminal catalytic domain | This domain contains the catalytic triad Cys-His-Asn. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR046332 | Small ubiquitin-related modifier 1, Ubl domain | Domain | |
| IPR000626 | Ubiquitin-like domain | Domain | |
| IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
| IPR022617 | Rad60/SUMO-like domain | Domain | |
| IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily | |
| IPR003653 | Ulp1 protease family, C-terminal catalytic domain | Domain |














