5AEK

Crystal structure of the human SENP2 C548S in complex with the human SUMO1 K48M F66W


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5aeka_ Alpha and beta proteins (a+b) Cysteine proteinases Cysteine proteinases Adenain-like Sentrin-specific protease 2, SENP2 HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd5aekc_ Alpha and beta proteins (a+b) Cysteine proteinases Cysteine proteinases Adenain-like Sentrin-specific protease 2, SENP2 HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed5aeke_ Alpha and beta proteins (a+b) Cysteine proteinases Cysteine proteinases Adenain-like Sentrin-specific protease 2, SENP2 HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd5aekg_ Alpha and beta proteins (a+b) Cysteine proteinases Cysteine proteinases Adenain-like Sentrin-specific protease 2, SENP2 HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id5aeki_ Alpha and beta proteins (a+b) Cysteine proteinases Cysteine proteinases Adenain-like Sentrin-specific protease 2, SENP2 HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd5aekk_ Alpha and beta proteins (a+b) Cysteine proteinases Cysteine proteinases Adenain-like Sentrin-specific protease 2, SENP2 HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Md5aekm_ Alpha and beta proteins (a+b) Cysteine proteinases Cysteine proteinases Adenain-like Sentrin-specific protease 2, SENP2 HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Od5aeko_ Alpha and beta proteins (a+b) Cysteine proteinases Cysteine proteinases Adenain-like Sentrin-specific protease 2, SENP2 HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Qd5aekq_ Alpha and beta proteins (a+b) Cysteine proteinases Cysteine proteinases Adenain-like Sentrin-specific protease 2, SENP2 HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Sd5aeks_ Alpha and beta proteins (a+b) Cysteine proteinases Cysteine proteinases Adenain-like Sentrin-specific protease 2, SENP2 HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ud5aeku_ Alpha and beta proteins (a+b) Cysteine proteinases Cysteine proteinases Adenain-like Sentrin-specific protease 2, SENP2 HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Wd5aekw_ Alpha and beta proteins (a+b) Cysteine proteinases Cysteine proteinases Adenain-like Sentrin-specific protease 2, SENP2 HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd5aekb_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd5aekd_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd5aekf_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Hd5aekh_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Jd5aekj_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld5aekl_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Nd5aekn_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Pd5aekp_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Rd5aekr_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Td5aekt_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Vd5aekv_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Xd5aekx_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCysteine proteinases 8040201 3001808 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCysteine proteinases 8040201 3001808 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCysteine proteinases 8040201 3001808 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCysteine proteinases 8040201 3001808 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyCysteine proteinases 8040201 3001808 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyCysteine proteinases 8040201 3001808 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyCysteine proteinases 8040201 3001808 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyCysteine proteinases 8040201 3001808 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyCysteine proteinases 8040201 3001808 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyCysteine proteinases 8040201 3001808 SCOP2B (2022-06-29)
USCOP2B SuperfamilyCysteine proteinases 8040201 3001808 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyCysteine proteinases 8040201 3001808 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyUbiquitin-like 8043414 3000157 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyUbiquitin-like 8043414 3000157 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyUbiquitin-like 8043414 3000157 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyUbiquitin-like 8043414 3000157 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyUbiquitin-like 8043414 3000157 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyUbiquitin-like 8043414 3000157 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyUbiquitin-like 8043414 3000157 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyUbiquitin-like 8043414 3000157 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyUbiquitin-like 8043414 3000157 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyUbiquitin-like 8043414 3000157 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyUbiquitin-like 8043414 3000157 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyUbiquitin-like 8043414 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APeptidase_C48e5aekA1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Peptidase_C48ECOD (1.6)
CPeptidase_C48e5aekC1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Peptidase_C48ECOD (1.6)
EPeptidase_C48e5aekE1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Peptidase_C48ECOD (1.6)
GPeptidase_C48e5aekG1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Peptidase_C48ECOD (1.6)
IPeptidase_C48e5aekI1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Peptidase_C48ECOD (1.6)
KPeptidase_C48e5aekK1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Peptidase_C48ECOD (1.6)
MPeptidase_C48e5aekM1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Peptidase_C48ECOD (1.6)
OPeptidase_C48e5aekO1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Peptidase_C48ECOD (1.6)
QPeptidase_C48e5aekQ1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Peptidase_C48ECOD (1.6)
SPeptidase_C48e5aekS1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Peptidase_C48ECOD (1.6)
UPeptidase_C48e5aekU1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Peptidase_C48ECOD (1.6)
WPeptidase_C48e5aekW1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Peptidase_C48ECOD (1.6)
BRad60-SLDe5aekB1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Rad60-SLDECOD (1.6)
DRad60-SLDe5aekD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Rad60-SLDECOD (1.6)
FRad60-SLDe5aekF1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Rad60-SLDECOD (1.6)
HRad60-SLDe5aekH1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Rad60-SLDECOD (1.6)
JRad60-SLDe5aekJ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Rad60-SLDECOD (1.6)
LRad60-SLDe5aekL1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Rad60-SLDECOD (1.6)
NRad60-SLDe5aekN1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Rad60-SLDECOD (1.6)
PRad60-SLDe5aekP1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Rad60-SLDECOD (1.6)
RRad60-SLDe5aekR1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Rad60-SLDECOD (1.6)
TRad60-SLDe5aekT1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Rad60-SLDECOD (1.6)
VRad60-SLDe5aekV1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Rad60-SLDECOD (1.6)
XRad60-SLDe5aekX1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Rad60-SLDECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.395.10 Alpha Beta 3-Layer(aba) Sandwich Adenoviral Proteinase ChainCATH (4.3.0)
C3.40.395.10 Alpha Beta 3-Layer(aba) Sandwich Adenoviral Proteinase ChainCATH (4.3.0)
E3.40.395.10 Alpha Beta 3-Layer(aba) Sandwich Adenoviral Proteinase ChainCATH (4.3.0)
G3.40.395.10 Alpha Beta 3-Layer(aba) Sandwich Adenoviral Proteinase ChainCATH (4.3.0)
I3.40.395.10 Alpha Beta 3-Layer(aba) Sandwich Adenoviral Proteinase ChainCATH (4.3.0)
K3.40.395.10 Alpha Beta 3-Layer(aba) Sandwich Adenoviral Proteinase ChainCATH (4.3.0)
M3.40.395.10 Alpha Beta 3-Layer(aba) Sandwich Adenoviral Proteinase ChainCATH (4.3.0)
O3.40.395.10 Alpha Beta 3-Layer(aba) Sandwich Adenoviral Proteinase ChainCATH (4.3.0)
Q3.40.395.10 Alpha Beta 3-Layer(aba) Sandwich Adenoviral Proteinase ChainCATH (4.3.0)
S3.40.395.10 Alpha Beta 3-Layer(aba) Sandwich Adenoviral Proteinase ChainCATH (4.3.0)
U3.40.395.10 Alpha Beta 3-Layer(aba) Sandwich Adenoviral Proteinase ChainCATH (4.3.0)
W3.40.395.10 Alpha Beta 3-Layer(aba) Sandwich Adenoviral Proteinase ChainCATH (4.3.0)
B3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
D3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
F3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
H3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
J3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
L3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
N3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
P3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
R3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
T3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
V3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
X3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C, E, G, I
PF02902Ulp1 protease family, C-terminal catalytic domain (Peptidase_C48)Ulp1 protease family, C-terminal catalytic domainThis domain contains the catalytic triad Cys-His-Asn.Domain
B, D, F, H, J
PF11976Ubiquitin-2 like Rad60 SUMO-like (Rad60-SLD)Ubiquitin-2 like Rad60 SUMO-like- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E, G, I
SENTRIN-SPECIFIC PROTEASE 2
B, D, F, H, J
SMALL UBIQUITIN-RELATED MODIFIER 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, C, E, G, I
IPR038765Papain-like cysteine peptidase superfamilyHomologous Superfamily
A, C, E, G, I
IPR003653Ulp1 protease family, C-terminal catalytic domainDomain
B, D, F, H, J
IPR046332Small ubiquitin-related modifier 1, Ubl domainDomain
B, D, F, H, J
IPR000626Ubiquitin-like domainDomain
B, D, F, H, J
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
B, D, F, H, J
IPR022617Rad60/SUMO-like domainDomain