4YVW

crystal structure of an enterovirus 71/coxsackievirus A16 chimeric virus-like particle

  • Classification: VIRUS
  • Organism(s): Enterovirus A71
  • Expression System: Saccharomyces cerevisiae
  • Mutation(s): 

  • Deposited: 2015-03-20 Released: 2015-04-15 
  • Deposition Author(s): Chen, R., Lyu, K.
  • Funding Organization(s): National Natural Science Foundation of China; Ministry of Science and Technology of China 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.8 Å
  • R-Value Free: 0.324 
  • R-Value Work: 0.286 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structures of Yeast-Produced Enterovirus 71 and Enterovirus 71/Coxsackievirus A16 Chimeric Virus-Like Particles Provide the Structural Basis for Novel Vaccine Design against Hand-Foot-and-Mouth Disease

Lyu, K.He, Y.L.Li, H.Y.Chen, R.

(2015) J.Virol. 89: 6196-6208


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Capsid protein VP1
E, A, D, J, M
297Enterovirus A71Mutation(s): 4 
Find proteins for F6KTB0 (Enterovirus A71)
Go to UniProtKB:  F6KTB0
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Capsid protein VP3
F, B, H, K, N
242Enterovirus A71Mutation(s): 1 
Find proteins for F6KTB0 (Enterovirus A71)
Go to UniProtKB:  F6KTB0
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Capsid protein VP0
G, C, I, L, O
323Enterovirus A71Mutation(s): 0 
Find proteins for F6KTB0 (Enterovirus A71)
Go to UniProtKB:  F6KTB0
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.8 Å
  • R-Value Free: 0.324 
  • R-Value Work: 0.286 
  • Space Group: P 42 3 2
Unit Cell:
Length (Å)Angle (°)
a = 349.151α = 90.00
b = 349.151β = 90.00
c = 349.151γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
PHENIXrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2015-03-20 
  • Released Date: 2015-04-15 
  • Deposition Author(s): Chen, R., Lyu, K.

Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina31370730
National Natural Science Foundation of ChinaChina31070144
Ministry of Science and Technology of ChinaChina2010CB912403

Revision History 

  • Version 1.0: 2015-04-15
    Type: Initial release
  • Version 1.1: 2015-05-27
    Type: Database references