4YVW | pdb_00004yvw

crystal structure of an enterovirus 71/coxsackievirus A16 chimeric virus-like particle


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth F]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068032 3000918 SCOP2B (2022-06-29)
H [auth B]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068032 3000918 SCOP2B (2022-06-29)
I [auth H]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068032 3000918 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068032 3000918 SCOP2B (2022-06-29)
K [auth N]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068032 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth G]Ribosomal_S7e4yvwG1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
L [auth C]Ribosomal_S7e4yvwC1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
N [auth L]Ribosomal_S7e4yvwL1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
ORibosomal_S7e4yvwO1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
M [auth I]Ribosomal_S7e4yvwI1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
B [auth F]Ribosomal_S7e4yvwF1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
H [auth B]Ribosomal_S7e4yvwB1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
I [auth H]Ribosomal_S7e4yvwH1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
J [auth K]Ribosomal_S7e4yvwK1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
K [auth N]Ribosomal_S7e4yvwN1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
A [auth E]Ribosomal_S7e4yvwE1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
D [auth A]Ribosomal_S7e4yvwA1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
G [auth M]Ribosomal_S7e4yvwM1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
F [auth J]Ribosomal_S7e4yvwJ1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)
E [auth D]Ribosomal_S7e4yvwD1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth G]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
L [auth C]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
N [auth L]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
O2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
M [auth I]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
B [auth F]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
H [auth B]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
I [auth H]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
J [auth K]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
K [auth N]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
A [auth E]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D [auth A]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
G [auth M]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
F [auth J]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
E [auth D]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
Capsid protein VP0
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
Capsid protein VP3
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
Capsid protein VP1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR059138Picornavirus capsid VP1Domain
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR002527Picornavirus 2B proteinDomain
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR003593AAA+ ATPase domainDomain
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR003138Picornavirus coat protein VP4Family
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR001676Picornavirus capsidDomain
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR029053Viral coat protein subunitHomologous Superfamily
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR014838Poliovirus 3A protein-likeDomain
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth G],
L [auth C],
M [auth I],
N [auth L],
O
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR059138Picornavirus capsid VP1Domain
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR002527Picornavirus 2B proteinDomain
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR003593AAA+ ATPase domainDomain
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR003138Picornavirus coat protein VP4Family
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR001676Picornavirus capsidDomain
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR000081Peptidase C3, picornavirus core protein 2ADomain
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR029053Viral coat protein subunitHomologous Superfamily
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR014838Poliovirus 3A protein-likeDomain
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth F],
H [auth B],
I [auth H],
J [auth K],
K [auth N]
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR059138Picornavirus capsid VP1Domain
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR002527Picornavirus 2B proteinDomain
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR003593AAA+ ATPase domainDomain
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR003138Picornavirus coat protein VP4Family
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR000199Peptidase C3A/C3B, picornaviralDomain
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR001676Picornavirus capsidDomain
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR000081Peptidase C3, picornavirus core protein 2ADomain
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR029053Viral coat protein subunitHomologous Superfamily
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR009003Peptidase S1, PA clanHomologous Superfamily
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR044067Picornavirales 3C/3C-like protease domainDomain
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR033703Picornavirus/Calicivirus coat proteinDomain
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR014838Poliovirus 3A protein-likeDomain
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
A [auth E],
D [auth A],
E [auth D],
F [auth J],
G [auth M]
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain