Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 80.24 kDa 
• Atom Count: 5310 
• Residue Count: 647 
• Unique protein chains: 1

4U0S

Structure of Eukaryotic fic domain containing protein with ADP

• DOI: 10.2210/pdb4U0S/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2014-07-14 Released: 2014-12-10 
• Deposition Author(s): Cole, A.R., Katan, M., Bunney, T.D.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.49 Å
• R-Value Free: 0.245 
• R-Value Work: 0.207 
• R-Value Observed: 0.209 

Literature

Crystal structure of the human, FIC-domain containing protein HYPE and implications for its functions.

Bunney, T.D., Cole, A.R., Broncel, M., Esposito, D., Tate, E.W., Katan, M.

(2014) Structure 22: 1831-1843

• PubMed: 25435325 
• DOI: 10.1016/j.str.2014.10.007
• Primary Citation of Related Structures:  
  4U07, 4U04, 4U0Z, 4U0S, 4U0U


• PubMed Abstract: 
  

Protein AMPylation, the transfer of AMP from ATP to protein targets, has been recognized as a new mechanism of host-cell disruption by some bacterial effectors that typically contain a FIC-domain. Eukaryotic genomes also encode one FIC-domain protein,HYPE, which has remained poorly characterized.Here we describe the structure of human HYPE, solved by X-ray crystallography, representing the first structure of a eukaryotic FIC-domain protein. We demonstrate that HYPE forms stable dimers with structurally and functionally integrated FIC-domains and with TPR-motifs exposed for protein-protein interactions. As HYPE also uniquely possesses a transmembrane helix, dimerization is likely to affect its positioning and function in the membrane vicinity. The low rate of auto AMPylation of the wild-type HYPE could be due to autoinhibition, consistent with the mechanism proposed for a number of putative FIC AMPylators. Our findings also provide a basis to further consider possible alternative cofactors of HYPE and distinct modes of target-recognition.

---

Organizational Affiliation: 

Division of Biosciences, Institute of Structural and Molecular Biology, University College London, Gower Street, London WC1E 6BT, UK. Electronic address: [e-mail].

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adenosine monophosphate-protein transferase FICD	A, B	344	Homo sapiens	Mutation(s): 1  Gene Names: FICD, HIP13, HYPE, UNQ3041/PRO9857 EC: 2.7.7 (PDB Primary Data), 3.1.4 (UniProt)
Find proteins for Q9BVA6 (Homo sapiens) Explore Q9BVA6  Go to UniProtKB:  Q9BVA6
NIH Common Fund Data Resources
PHAROS  Q9BVA6 GTEx  ENSG00000198855

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ADP	A, B	ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N
PG4	A, B	TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N
MG	A, B	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

External Ligand Annotations
ID	Binding Affinity (Sequence Identity %)
ADP	Kd:  160   nM  Binding MOAD

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.49 Å
• R-Value Free: 0.245 
• R-Value Work: 0.207 
• R-Value Observed: 0.209 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.04	α = 90
b = 76.01	β = 107.56
c = 92.03	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing
Coot	model building
BUSTER	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2014-07-14 
• Released Date: 2014-12-10 
Deposition Author(s): Cole, A.R., Katan, M., Bunney, T.D.

Revision History 

• Version 1.0: 2014-12-10
  Type: Initial release
  
• Version 1.1: 2015-02-04
  Changes: Database references