4MTK

Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.32 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.170 
  • R-Value Observed: 0.175 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

The conserved architecture of the T6SS central spike complex

Sycheva, L.V., Shneider, M.M., Basler, M., Ho, B.T., Mekalanos, J.J., Leiman, P.G.

To be published.

Macromolecules
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(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
VgrG1A, B, C, D, E, F643Pseudomonas aeruginosa PAO1Mutation(s): 0 
Gene Names: PA0091, vgrG1, vgrG1a
Find proteins for Q9I741 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore Q9I741 
Go to UniProtKB:  Q9I741
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
TAM
Query on TAM
Download Ideal Coordinates CCD File 
 CB [auth A], CG [auth D]TRIS(HYDROXYETHYL)AMINOMETHANE
C7 H17 N O3
GKODZWOPPOTFGA-UHFFFAOYSA-N		 Ligand Interaction
SO4
Query on SO4
Download Ideal Coordinates CCD File 
AA [auth A] , AB [auth A] , AC [auth B] , AD [auth B] , AE [auth C] , AF [auth D] , AG [auth D] , AH [auth E] , 
AA [auth A],  AB [auth A],  AC [auth B],  AD [auth B],  AE [auth C],  AF [auth D],  AG [auth D],  AH [auth E],  AI [auth F],  AJ [auth F],  BA [auth A],  BB [auth A],  BC [auth B],  BD [auth B],  BE [auth C],  BF [auth D],  BG [auth D],  BH [auth E],  BI [auth F],  BJ [auth F],  CA [auth A],  CC [auth B],  CD [auth C],  CE [auth C],  CF [auth D],  CH [auth E],  CI [auth F],  CJ [auth F],  DA [auth A],  DB [auth A],  DC [auth B],  DD [auth C],  DE [auth C],  DF [auth D],  DG [auth D],  DH [auth E],  DI [auth F],  DJ [auth F],  EA [auth A],  EB [auth B],  EC [auth B],  ED [auth C],  EE [auth C],  EF [auth D],  EG [auth E],  EH [auth E],  EI [auth F],  FA [auth A],  FB [auth B],  FC [auth B],  FD [auth C],  FE [auth C],  FF [auth D],  FG [auth E],  FH [auth E],  FI [auth F],  G [auth A],  GA [auth A],  GB [auth B],  GC [auth B],  GD [auth C],  GE [auth C],  GF [auth D],  GG [auth E],  GH [auth E],  GI [auth F],  H [auth A],  HA [auth A],  HB [auth B],  HC [auth B],  HD [auth C],  HE [auth C],  HF [auth D],  HG [auth E],  HH [auth E],  HI [auth F],  I [auth A],  IA [auth A],  IB [auth B],  IC [auth B],  ID [auth C],  IE [auth C],  IF [auth D],  IG [auth E],  IH [auth E],  II [auth F],  J [auth A],  JA [auth A],  JB [auth B],  JC [auth B],  JD [auth C],  JE [auth C],  JF [auth D],  JG [auth E],  JH [auth E],  JI [auth F],  K [auth A],  KA [auth A],  KB [auth B],  KC [auth B],  KD [auth C],  KE [auth C],  KF [auth D],  KG [auth E],  KH [auth E],  KI [auth F],  L [auth A],  LA [auth A],  LB [auth B],  LC [auth B],  LD [auth C],  LE [auth C],  LF [auth D],  LG [auth E],  LH [auth E],  LI [auth F],  M [auth A],  MA [auth A],  MB [auth B],  MC [auth B],  MD [auth C],  ME [auth C],  MF [auth D],  MG [auth E],  MH [auth F],  MI [auth F],  N [auth A],  NA [auth A],  NB [auth B],  NC [auth B],  ND [auth C],  NE [auth C],  NF [auth D],  NG [auth E],  NH [auth F],  NI [auth F],  O [auth A],  OA [auth A],  OB [auth B],  OC [auth B],  OD [auth C],  OE [auth C],  OF [auth D],  OG [auth E],  OH [auth F],  OI [auth F],  P [auth A],  PA [auth A],  PB [auth B],  PC [auth B],  PD [auth C],  PE [auth C],  PF [auth D],  PG [auth E],  PH [auth F],  PI [auth F],  Q [auth A],  QA [auth A],  QB [auth B],  QC [auth B],  QD [auth C],  QE [auth C],  QF [auth D],  QG [auth E],  QH [auth F],  QI [auth F],  R [auth A],  RA [auth A],  RB [auth B],  RC [auth B],  RD [auth C],  RE [auth C],  RF [auth D],  RG [auth E],  RH [auth F],  RI [auth F],  S [auth A],  SA [auth A],  SB [auth B],  SC [auth B],  SD [auth C],  SE [auth C],  SF [auth D],  SG [auth E],  SH [auth F],  SI [auth F],  T [auth A],  TA [auth A],  TB [auth B],  TC [auth B],  TD [auth C],  TE [auth C],  TF [auth D],  TG [auth E],  TH [auth F],  TI [auth F],  U [auth A],  UA [auth A],  UB [auth B],  UC [auth B],  UD [auth C],  UE [auth D],  UF [auth D],  UG [auth E],  UH [auth F],  UI [auth F],  V [auth A],  VA [auth A],  VB [auth B],  VC [auth B],  VD [auth C],  VE [auth D],  VF [auth D],  VG [auth E],  VH [auth F],  VI [auth F],  W [auth A],  WA [auth A],  WB [auth B],  WC [auth B],  WD [auth C],  WE [auth D],  WF [auth D],  WG [auth E],  WH [auth F],  WI [auth F],  X [auth A],  XA [auth A],  XB [auth B],  XC [auth B],  XD [auth C],  XE [auth D],  XF [auth D],  XG [auth E],  XH [auth F],  XI [auth F],  Y [auth A],  YA [auth A],  YB [auth B],  YC [auth B],  YD [auth C],  YE [auth D],  YF [auth D],  YG [auth E],  YH [auth F],  YI [auth F],  Z [auth A],  ZA [auth A],  ZB [auth B],  ZC [auth B],  ZD [auth C],  ZE [auth D],  ZF [auth D],  ZG [auth E],  ZH [auth F],  ZI [auth F]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.32 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.170 
  • R-Value Observed: 0.175 
  • Space Group: P 61
  • Diffraction Data DOI: 10.15785/SBGRID/235 SBGrid
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 168.275α = 90
b = 168.275β = 90
c = 652.849γ = 120
Software Package:
Software NamePurpose
RESOLVEmodel building
PHENIXrefinement
XDSdata reduction
XDSdata scaling
RESOLVEphasing

Structure Validation

View Full Validation Report


View more in-depth experimental data

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-10-01
    Type: Initial release
  • Version 1.1: 2017-11-15
    Changes: Refinement description