4LRV

Crystal structure of DndE from Escherichia coli B7A involved in DNA phosphorothioation modification


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural insights into DndE from Escherichia coli B7A involved in DNA phosphorothioation modification

Hu, W.Wang, C.K.Liang, J.D.Zhang, T.L.Hu, Z.P.Wang, Z.J.Lan, W.X.Li, F.Wu, H.M.Ding, J.P.Wu, G.Deng, Z.X.Cao, C.

(2012) Cell Res. 22: 1203-1206


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DNA sulfur modification protein DndE
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
109N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.201 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 97.845α = 90.00
b = 97.306β = 95.81
c = 218.532γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data scaling
PHENIXphasing
PHENIXmodel building
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-08-28
    Type: Initial release
  • Version 1.1: 2013-09-04
    Type: Experimental preparation