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Crystal structure of DndE from Escherichia coli B7A involved in DNA phosphorothioation modification


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
PPeptidase_C30e4lrvP1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
OPeptidase_C30e4lrvO1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
NPeptidase_C30e4lrvN1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
MPeptidase_C30e4lrvM1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
LPeptidase_C30e4lrvL1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
KPeptidase_C30e4lrvK1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
JPeptidase_C30e4lrvJ1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
IPeptidase_C30e4lrvI1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
HPeptidase_C30e4lrvH1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
GPeptidase_C30e4lrvG1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
FPeptidase_C30e4lrvF1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
EPeptidase_C30e4lrvE1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
DPeptidase_C30e4lrvD1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
CPeptidase_C30e4lrvC1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
BPeptidase_C30e4lrvB1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_C30ECOD (v295.2)
AA2Me4lrvA1 A: alpha arraysX: P-loop domains-likeH: Metalloproteases (zincins) catalytic domainT: Metalloproteases (zincins) catalytic domainF: A2MECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
P1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
O1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
N1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
M1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
L1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
K1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
J1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
I1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
H1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
G1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
F1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
E1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
D1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
C1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
B1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)
A1.10.1220.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant DNA sulphur modification protein DndECATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR038472DNA sulphur modification protein DndE superfamilyHomologous Superfamily
A, B, C, D, E
IPR014969DNA sulphur modification protein DndEFamily